Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Integration of Monailabel and Girder #1697

Open
Aurora-God opened this issue Jun 5, 2024 · 1 comment
Open

Integration of Monailabel and Girder #1697

Aurora-God opened this issue Jun 5, 2024 · 1 comment

Comments

@Aurora-God
Copy link

Hello, I would like to integrate Monailabel with Girder as the data source, and both Monailabel and Girder will be launched using Docker
The problem I encountered:
I used the official image of Monailabel, version: projectmonai/Monailabel: 0.8.0
After entering the container, I used the command to start monai: monailabel start_server -- app/usr/local/monailabel/sample apps/radiology -- studies http:https://girder_username:girder_password @Girder_ip: girder_port/api/v1-- conf models deepedit -- conf datasets. dataset1. source girder -- conf girder.api_token<api_key I created from the girder web page>
But when I access this address: http:https://monai_ip:8000/ohif/ , will jump here: http:https://monai_ip:8000/ohif/notfoundserver Unable to access my data in Girder
I'm not sure where the problem is, but I can be certain that the Docker port and IP address are not the problem, and I started it in the same way (different startup commands: monailabel start_server -- app/usr/local/monailabel/sample apps/radiology -- studies) http:https://username:password @Orthanc_ip: Orthanc_ port/dicom web -- conf models deepedit
)Can connect to Orthanc to access its data
Please help me, thank you

@AHarouni
Copy link
Contributor

Hi Aurora
I am not familiar with Girder, does it use dicom web to access data ? If not you need to figure how Grider exposes data and write a datastore to allow this communication. Check other datastores as xnat / cvat etc.

if it does use dicom web then you should check that you are able to access data using the Grider_ip:port
then the issue might be in the user / password being passed since 0.7 or so it changed to be passed as variables as

export MONAI_LABEL_DICOMWEB_USERNAME=orthanc
export MONAI_LABEL_DICOMWEB_PASSWORD=orthanc

Hope that helps

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants