Commits

Commits on Jan 20, 2021

faster deepcopy
diegozea
committedJan 20, 2021

Commits on Jan 18, 2021

Fix NetworkX version
diegozea
committedJan 18, 2021

Commits on Jan 14, 2021

memory and max topo fixed
elolaine
committedJan 14, 2021

Commits on Dec 12, 2020

inferPhylo debugged
elolaine
committedDec 12, 2020

Commits on Oct 29, 2020

Update README.md
elolaine
committedOct 29, 2020
Update README.md
elolaine
committedOct 29, 2020

Commits on Dec 4, 2019

Fix plots_with_exons.jl
diegozea
committedDec 4, 2019

Commits on Nov 29, 2019

Update README.md
elolaine
committedNov 29, 2019
Update README.md
elolaine
committedNov 29, 2019

Commits on Oct 17, 2019

Fix Unicode handling (e.g. MYO1B)
diegozea
committedOct 17, 2019

Commits on Sep 30, 2019

Update .travis.yml
diegozea
committedSep 30, 2019
Update README.md
diegozea
committedSep 30, 2019

Commits on Sep 9, 2019

Add example
diegozea
committedSep 9, 2019
Create lowercase cif file for case-sensitive systems
diegozea
committedSep 9, 2019

Commits on Sep 7, 2019

Update README.md
diegozea
committedSep 7, 2019

Commits on Sep 4, 2019

Update docs
diegozea
committedSep 4, 2019
Instantiate Julia project before calling scripts.
diegozea
committedSep 4, 2019
Do not indicate cwd for _annotated.pir
diegozea
committedSep 4, 2019
Use os.path.join instead of string concatenation
diegozea
committedSep 4, 2019
Fix bug: use re.search instead of re.match
diegozea
committedSep 4, 2019
More verbose and clear
diegozea
committedSep 4, 2019
Fix samll bug with variable name
diegozea
committedSep 4, 2019
Relax human gene id regex
diegozea
committedSep 4, 2019
Be less verbose and only use subdirs
diegozea
committedSep 4, 2019
Be more verbose about used paths
diegozea
committedSep 4, 2019
Small bug; use root_dirs instead of dirs
diegozea
committedSep 4, 2019
Be more verbose about used paths
diegozea
committedSep 4, 2019
Try to fix introduced error: Look for created dirs
diegozea
committedSep 4, 2019
dirs only contains folders that has transcripts.pir files
diegozea
committedSep 4, 2019
Fix bug: do not search for root/root
diegozea
committedSep 4, 2019
Add --human argument to model only human isoforms
diegozea
committedSep 4, 2019
Fix bug: only use paths containing a transcripts.pir file
diegozea
committedSep 4, 2019
-i default to cwd, only use paths containing a transcripts.pir file
diegozea
committedSep 4, 2019
Use complete path to hhmakemodel.py when --hhlib is not used
diegozea
committedSep 4, 2019

Commits on Sep 3, 2019

Use default hh-suite program names if --hhlib is not used, use default contextlib
diegozea
committedSep 3, 2019