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net_download should support XNAT #183

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tvercaut opened this issue Jul 31, 2018 · 2 comments
Open

net_download should support XNAT #183

tvercaut opened this issue Jul 31, 2018 · 2 comments
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@tvercaut
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I am transferring cmiclab issue 198 to GitHub as @atbenmurray expressed interest in helping improve support for XNAT in NiftyNet.

As initially discussed with @tomdoel @tvercaut and @dzhoshkun, it would be good for net_download to support fetching data from an XNAT server. This would allow us to easily share data and models internally (and externally, if the group sets up a public XNAT server) by uploading to an XNAT project.

We have python code for downloading data from XNAT. The main issue according to @tomdoel was deciding how to deal with authentication.

(A similar mechanism could be used to fetch code from a GitHub or GitLab server.)

@tvercaut
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tvercaut commented Jun 4, 2019

As discussed with @tomvars and @mjorgecardoso a similar requirement for TCIA and Synapse would help making better use of challenge-related datasets.

@atbenmurray
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@wyli and I had a discussion related to memory-based images #346 and he is modifying the implementation of #346 accordingly. This should provide the framework for how to handle this and other input-source-related items

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