An R-focused pipeline toolkit for reproducibility and high-performance computing

Set up commonly used 📦 components

rrtools: Tools for Writing Reproducible Research in R

Inferring CNV from Single-Cell RNA-Seq

R Interface to D3 Visualizations

Be nice on the web

Make sankey, alluvial and sankey bump plots in ggplot

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

An inversion of renv for low effort reproducible R package libraries

Analysis pipeline for cancer sequencing data

🎯 Human transcription factor target genes from 6 databases in convenient R format.

Battenberg R package for subclonal copynumber estimation

An R package for hierarchical clustering with p-values

R interface to 'Gos'

Demonstrate A Drake Workflow Package

Dirichlet Process based methods for subclonal reconstruction of tumours

Allele frequency filter app

Bayesian Epiallele Detection (BED)

MCMC for Dirichlet Process mixture models

New version of sysSVM, for pan-cancer use

Code for mutational timing of gains and signatures analysis

More extensive tools for bayesian epiallele detection (beta version)