-
Notifications
You must be signed in to change notification settings - Fork 3
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Add slidescore server URL and slidescore study ID to slidescore_mapping.txt #40
Comments
From slack: Jonas: I guess outputting it as json will help right Yoni: a meta.json with slidescore_server: str, slidescore_study_id: int, slide_mapping: dict ? Certainly Jonas: Yes all in a file not sure if meta.json is the proper name |
While working on it, I realized that it might happen that users download multiple setudies to a single directory, which would then overwrite the
Which may seem a bit redundant. However, I added the The name |
@AjeyPaiK Do you use the old way of saving the ids? I could still save it the old way. |
@jonasteuwen With the current set-up I can't save multiple slidescore slides that have the same filename. I'd say this is not really supposed to happen, unless there's duplicates which we don't care about. But maybe somehow it could happen. Should we handle this? |
Is your feature request related to a problem? Please describe.
Documentation is improved. e.g.
/mnt/archive/data/pathology/youngboost_TNBC_HE
contains a TNBC subset of slides, but it is unclear where these slides come from. Also, it's unknown how to upload slides from the directory alone.Describe the solution you'd like
study.txt
with required info for slidescore to upload annotatationsDescribe alternatives you've considered
The text was updated successfully, but these errors were encountered: