Commits

Commits on Dec 7, 2018

updating .gitignore
CavinWard
committedDec 7, 2018
Merge branch 'master' of https://github.com/NCBI-Hackathons/MR_BACOn
CavinWard
committedDec 7, 2018
KEGG API download of pathways and 'Offline' MR BACOn CAD-serum analyses
CavinWard
committedDec 7, 2018

Commits on Aug 20, 2018

Nick adding data
Nick Robert Colaianni
committedAug 20, 2018

Commits on Aug 18, 2018

alterations to how likely metabolites are assessed (3/5 tests) and updating text on pathway plot. fast backend functions also work now
CavinWard
committedAug 18, 2018
was missing a metabolite somehow
CavinWard
committedAug 18, 2018
updates to server.R and ui.R for message when no overlap is found in GWAS and stop Warning when no overlap is found by perform_mr
CavinWard
committedAug 18, 2018

Commits on Aug 13, 2018

gitignore update
CavinWard
committedAug 13, 2018
gitignore update
CavinWard
committedAug 13, 2018
R and perl scripts to filter CAD GWAS at p < 0.05
CavinWard
committedAug 13, 2018
file of no results for serum data
CavinWard
committedAug 13, 2018
redid clumping of data for 'fast' backend functions
CavinWard
committedAug 13, 2018
updated backend functions
CavinWard
committedAug 13, 2018

Commits on Aug 12, 2018

preclump focuses on overlap with CAD now and writes file for metabs with no overlap
CavinWard
committedAug 12, 2018
more fast fixing
CavinWard
committedAug 12, 2018
more fast fixing
CavinWard
committedAug 12, 2018
file to hold metabs with no results
CavinWard
committedAug 12, 2018
fixing fast backend function
CavinWard
committedAug 12, 2018
test
CavinWard
committedAug 12, 2018

Commits on Aug 7, 2018

Merge branch 'master' of https://github.com/NCBI-Hackathons/MR_BACOn
JayKu4418
committedAug 7, 2018
Adding a gitignore file to not track Rhistory files
JayKu4418
committedAug 7, 2018
Adding changes for pathway analysis
JayKu4418
committedAug 7, 2018
chr filtered 0.05 with chrom and pos
CavinWard
committedAug 7, 2018
cad filtered at 0.05
CavinWard
committedAug 7, 2018

Commits on Aug 6, 2018

just adding temp file for exposure data
CavinWard
committedAug 6, 2018
adding slow backend functions updated to latest TwoSample MR
CavinWard
committedAug 6, 2018
adding pre-clumped data and script
CavinWard
committedAug 6, 2018
adding backend_functions_pvalue-cwc-fast.R
CavinWard
committedAug 6, 2018
pre-clumped metab data with preclump metab data v1.R and wrote backend_functions_pvalue-cwc-fast.R for faster processing
CavinWard
committedAug 6, 2018
backend_functions_pvalue-cwc allows MR BACOn to work with latest TwoSampleMR release
CavinWard
committedAug 6, 2018
fixed the pathway analysis. Still slow but works now.
CavinWard
committedAug 6, 2018
updated backend_functions_pvalue so use pval.outcome so results are returned again
CavinWard
committedAug 6, 2018

Commits on Apr 8, 2018

Update merge_gwas_assoc.sh
YueYvetteHao
committedApr 8, 2018
Update merge_gwas_assoc.sh
YueYvetteHao
committedApr 8, 2018

Commits on Apr 6, 2018

Merge pull request #28 from NCBI-Hackathons/add_shiny_app
JayKu4418
committedApr 6, 2018