Repository for the manuscript "Identification of the mode of evolution in incomplete carbonate successions".

Niklas Hohmann
Utrecht University
email: n.h.hohmann [at] uu.nl
Web page: www.uu.nl/staff/NHohmann
ORCID: 0000-0003-1559-1838

Jan Roel Koelewijn
Utrecht University
ORCID: 0000-0002-4668-3797

Emilia Jarochowska
Utrecht University
email: e.b.jarochowska [at] uu.nl
Web page: www.uu.nl/staff/EBJarochowska
ORCID: 0000-0001-8937-9405

Base R and Rstudio.
Packages paleoTS, renv, DAIME, ggplot2 and their dependencies.

Open the Rproject file "stratigraphy_paper.Rproj" in Rstudio. This will bootstrap the renv package if it is not installed yet. Next, run

renv::restore()

This will install all required packages and their dependencies needed in the project.

• README.md : Readme file
• REPRODUCEME.md : Instructions for repetition of the study
• LICENSE : Apache 2.0 license text
• .gitignore : Files not tracked by git
• CarbonateStratPalEvo.Rproj : Rstudio project file
• renv : Folder generated by renv package
• data : Folder for data
  • matlab_outputs : Folder with raw data generated by CarboCATLite in Matlab
    • scenarioA_matlab_outputs.mat : raw data of scenario A
    • scenarioB_matlab_outputs.mat : raw data of scenario B
    • scenarioA_and_B_matlab_to_R.mat : function to extract ADMs from CarboCATLite outputs
    • get_adm_from_carbocat_outputs.m : ADMs from CarboCATLite for import in R
  • R_outputs : Folder with data generated by R
    • ageDepthModelsScenariosAandB.Rdata : ADMs from scenario A and B
    • results_modes_of_evolution.Rdata
• code : Folder with main code
  • analysis_tests_and_simulations.R
  • simulate_and_test_modes_of_evolution.R
  • import_adm_to_R.R
  • multiplot.R
  • process_adm_from_matlab.R : Import ADMs from Matlab into R
• figs : Folder with figures
• tables : Folder with tables

Copyright 2023 Netherlands eScience Center and Utrecht University

Apache 2.0 License, see LICENSE file for license text.

Funded by the European Union (ERC, MindTheGap, StG project no 101041077). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.