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Research-Scripts

The various data processing scripts for research.

Preference

  • I prefer using python 3 and Gnuplot to format the data and generate figures automatically.
  • I am a Windows 10 user and I use ImageMagick as an image-processing command line tool.
  • I use the latest version of MATLAB if possible.

Contents

ColorMask

To generate overlayed color layers on NIR-II camera images. MATLAB + Photoshop.

Dicom

Some code to process the DICOM files.

DLS

I use a Malvern NanoSizer DLS as well as a Brookhaven one.

Fluorescence

I measure fluorescence emission spectra with a special spectrometer. The wavelength is mainly in the NIR-II range.

Miscellaneous

Simple post-processing tools.

  • collage.bat To make combined figure panel. Uses ImageMagick.
  • makegif.bat To make a .gif animation. Uses ImageMagick.
  • fluo_get_ctime.py To record the creation time of files in a folder.

Sharing

I always double check to ensure the scripts online contain no confidential information, so anyone, if interested, is encouraged to download and use them in non-profit research-related scenarios. Since they are very simple, straightforward codes, I do not expect anyone with the intention to use them beyond the GPL license. But if by any chance you do have such a concern, please contact me to obtain a written permission.