Stars
A program for the analysis of single cell nanopore long read data
A tool for somatic structural variant calling using long reads
Call and score variants from WGS/WES of rare disease patients.
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
The fastai book, published as Jupyter Notebooks
A repo for the Twist HiFi capture/snakemake workflow
A playbook for systematically maximizing the performance of deep learning models.
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Applied Computational Genomics Course at UU: Spring 2020
Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
🎓 Path to a free self-taught education in Computer Science!
Pipeline to convert a haploid assembly into diploid
A template repository for Snakemake pipepline(s) and a python command-line toolkit.
📺 Discover the latest machine learning / AI courses on YouTube.
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
A curated list of awesome ggplot2 tutorials, packages etc.
The open source frontend for GitBook doc sites
A declarative interactive genomics visualization library for Python.
Analyzing sketching and sampling approaches for fast and accurate read classification
An open access book on scientific visualization using python and matplotlib
Log shell-commands and used files. Snapshot executed scripts. Fully automatic.