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DESCRIPTION
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DESCRIPTION
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Package: motifscanR
Type: Package
Title: Tools for Scanning TF motif on DNA regions
Version: 0.9.3
Authors@R: person("Zhijie", "Guo", email = "[email protected]",
role = c("aut", "cre"))
Description: Given a set of input genomic regions, motifscanR scans
the sequences to detect the occurrences of known motifs. It can
also applies a statistical test on each motif to check whether
the motif is significantly over- or under-represented (enriched or depleted)
in the input genomic regions compared to another set of control regions.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0.3)
Imports:
TFBSTools,
Biostrings,
BSgenome,
GenomeInfoDb,
GenomicRanges,
GenomicFeatures,
Rcpp,
Rsamtools,
S4Vectors,
JASPAR2022,
parallel,
pbapply
RoxygenNote: 7.2.1
LinkingTo:
Rcpp,
RcppArmadillo
Suggests:
BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
testthat (>= 3.0.0)
Date: 2024-07-04