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Download of Histology Image of Visium(n=30) data #145

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Weiqin-Zhao opened this issue Jun 14, 2024 · 0 comments
Open

Download of Histology Image of Visium(n=30) data #145

Weiqin-Zhao opened this issue Jun 14, 2024 · 0 comments

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@Weiqin-Zhao
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Dear Author,

Thank you for your excellent work!

May I know where I can access the histology images(*.tif) of the Visium(n=30) data?

In the adata_vis_orig.h5ad, the sample id of the Visium(n=30) data are:
{'Br2720_ant',
'Br2720_mid',
'Br2720_post',
'Br2743_ant',
'Br2743_mid',
'Br2743_post',
'Br3942_ant',
'Br3942_mid',
'Br3942_post',
'Br6423_ant',
'Br6423_mid',
'Br6423_post',
'Br6432_ant',
'Br6432_mid',
'Br6432_post',
'Br6471_ant',
'Br6471_mid',
'Br6471_post',
'Br6522_ant',
'Br6522_mid',
'Br6522_post',
'Br8325_ant',
'Br8325_mid',
'Br8325_post',
'Br8492_ant',
'Br8492_mid',
'Br8492_post',
'Br8667_ant',
'Br8667_mid',
'Br8667_post'}

However, in the "/raw-data/Images/folder" in the globus link, I can only find Br2720 and Br6432.
I would be greatly appreciate if you could provide more assistance.

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