{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":629600319,"defaultBranch":"main","name":"BioDEX","ownerLogin":"KarelDO","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-04-18T16:30:01.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/48281913?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1683646020.0","currentOid":""},"activityList":{"items":[{"before":"0be6eecc71bc0376e16dc42ed45c2d5c770ea43d","after":"f6e4f4922531f27da2bff5f4e0eb47da5154ed7c","ref":"refs/heads/main","pushedAt":"2024-01-29T21:02:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"6b97c5137aa543d9032feb4aedb0ab998427ab27","after":"0be6eecc71bc0376e16dc42ed45c2d5c770ea43d","ref":"refs/heads/main","pushedAt":"2024-01-26T20:30:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"no circumflex in reaction names","shortMessageHtmlLink":"no circumflex in reaction names"}},{"before":"69b259b09ada0bfae3ca8ec2d12bccb009fa8b9b","after":"6b97c5137aa543d9032feb4aedb0ab998427ab27","ref":"refs/heads/main","pushedAt":"2024-01-26T19:49:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"better normalziation for biodex reactions: no commas in reactions","shortMessageHtmlLink":"better normalziation for biodex reactions: no commas in reactions"}},{"before":"43069856a4ab79e1fd1cdf3435c9351f178c3123","after":"69b259b09ada0bfae3ca8ec2d12bccb009fa8b9b","ref":"refs/heads/main","pushedAt":"2023-11-01T23:11:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"added unmerged reactions to reaction extraction for iaa","shortMessageHtmlLink":"added unmerged reactions to reaction extraction for iaa"}},{"before":"e3cf60aeb05c6a247c147e1248bc87e29e7e3c3b","after":"43069856a4ab79e1fd1cdf3435c9351f178c3123","ref":"refs/heads/main","pushedAt":"2023-11-01T22:44:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"preempt icsr metrics if data not available","shortMessageHtmlLink":"preempt icsr metrics if data not available"}},{"before":"76921d2d1677f14cdcdcad144b0ece3b335c8a01","after":"e3cf60aeb05c6a247c147e1248bc87e29e7e3c3b","ref":"refs/heads/main","pushedAt":"2023-11-01T20:53:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"create a dataset for reaction extraction","shortMessageHtmlLink":"create a dataset for reaction extraction"}},{"before":"a8167e423d4e1d114a33f249ac31d1da46ec5d7b","after":"76921d2d1677f14cdcdcad144b0ece3b335c8a01","ref":"refs/heads/main","pushedAt":"2023-11-01T04:43:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"add do_sample parameter","shortMessageHtmlLink":"add do_sample parameter"}},{"before":"c85081ef229f1a1cbaef8b342c0da06db749de4b","after":"a8167e423d4e1d114a33f249ac31d1da46ec5d7b","ref":"refs/heads/main","pushedAt":"2023-11-01T01:49:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"made detangled a kwarg","shortMessageHtmlLink":"made detangled a kwarg"}},{"before":"7e3cf9086af5b3234d51c9ceaaa87a69e7a26e45","after":"c85081ef229f1a1cbaef8b342c0da06db749de4b","ref":"refs/heads/main","pushedAt":"2023-10-27T16:09:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"number of reactions per report","shortMessageHtmlLink":"number of reactions per report"}},{"before":"4bf8e11a6e823a7c5937348e7fb779cd00b99b6f","after":"7e3cf9086af5b3234d51c9ceaaa87a69e7a26e45","ref":"refs/heads/main","pushedAt":"2023-10-19T18:24:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"attribute level breakdown for random and iaa","shortMessageHtmlLink":"attribute level breakdown for random and iaa"}},{"before":"7e5464ab6242a1263a0bfab51eda790fd1e141be","after":"4bf8e11a6e823a7c5937348e7fb779cd00b99b6f","ref":"refs/heads/main","pushedAt":"2023-08-23T14:03:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"update plots reviewer comments","shortMessageHtmlLink":"update plots reviewer comments"}},{"before":"10891540914d009e9fa86b7ba827154cc7826ca5","after":"7e5464ab6242a1263a0bfab51eda790fd1e141be","ref":"refs/heads/main","pushedAt":"2023-08-23T13:26:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"explicitly add predictions of best gpt4 run to the analysis folder","shortMessageHtmlLink":"explicitly add predictions of best gpt4 run to the analysis folder"}},{"before":"e35e44236e16beb5466dfd1d54bd47e3ebe74023","after":"10891540914d009e9fa86b7ba827154cc7826ca5","ref":"refs/heads/main","pushedAt":"2023-08-23T13:06:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"larger gpt4 experiment","shortMessageHtmlLink":"larger gpt4 experiment"}},{"before":"ebe4260ab5bf737b1d63069bbcf54b4172db5747","after":"e35e44236e16beb5466dfd1d54bd47e3ebe74023","ref":"refs/heads/main","pushedAt":"2023-06-13T09:59:04.908Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"add detangled icsr metrics","shortMessageHtmlLink":"add detangled icsr metrics"}},{"before":"9105a00f34128e83b8f4959ce3c3b186a853a72f","after":"ebe4260ab5bf737b1d63069bbcf54b4172db5747","ref":"refs/heads/main","pushedAt":"2023-06-13T08:34:54.977Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"gpt3 result on test set. update readme","shortMessageHtmlLink":"gpt3 result on test set. update readme"}},{"before":"a54bf7eeb1ac138fc25b64b352024ee194ba70e4","after":"9105a00f34128e83b8f4959ce3c3b186a853a72f","ref":"refs/heads/main","pushedAt":"2023-06-13T07:55:36.637Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"added per year to graphs","shortMessageHtmlLink":"added per year to graphs"}},{"before":"b6ee5ea75aef470025f20ec12dc337633b6a00cc","after":"a54bf7eeb1ac138fc25b64b352024ee194ba70e4","ref":"refs/heads/main","pushedAt":"2023-06-08T09:06:35.621Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"count articles before 2000","shortMessageHtmlLink":"count articles before 2000"}},{"before":"c5a38e4c96d297068d76a28e98da064cbe8a801f","after":"b6ee5ea75aef470025f20ec12dc337633b6a00cc","ref":"refs/heads/main","pushedAt":"2023-06-05T14:27:04.434Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"reaction classification figure for in the presentation","shortMessageHtmlLink":"reaction classification figure for in the presentation"}},{"before":"2e7580804809574c20850e5cd503f6db80c651bf","after":"e42ce377202ac89217fdaa6404fbf789fc9f1709","ref":"refs/heads/pv-qa","pushedAt":"2023-06-05T13:57:04.775Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"new upload","shortMessageHtmlLink":"new upload"}},{"before":"7cc06bee98e117a3bcda7a8b7882b86e85a97a7a","after":"2e7580804809574c20850e5cd503f6db80c651bf","ref":"refs/heads/pv-qa","pushedAt":"2023-06-01T14:22:26.010Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"better conv format","shortMessageHtmlLink":"better conv format"}},{"before":"eae67ef003db3c8edf2eb46c9235c08813983043","after":"7cc06bee98e117a3bcda7a8b7882b86e85a97a7a","ref":"refs/heads/pv-qa","pushedAt":"2023-05-31T15:52:27.186Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"thinking about non-api models","shortMessageHtmlLink":"thinking about non-api models"}},{"before":"006f50c1d5e2bea7194470a81961a41f02d804c1","after":"eae67ef003db3c8edf2eb46c9235c08813983043","ref":"refs/heads/pv-qa","pushedAt":"2023-05-31T12:28:56.991Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"added detangled metrics to pv-conv evaluation","shortMessageHtmlLink":"added detangled metrics to pv-conv evaluation"}},{"before":"b40f0a7f558ce0fc510872bb0b53ab04681b0248","after":"006f50c1d5e2bea7194470a81961a41f02d804c1","ref":"refs/heads/pv-qa","pushedAt":"2023-05-31T10:03:14.370Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"set up gpt4 runs for pv-conv dataset","shortMessageHtmlLink":"set up gpt4 runs for pv-conv dataset"}},{"before":"282f9c51697db6950fbc55dbcf7a682f4526a181","after":"b40f0a7f558ce0fc510872bb0b53ab04681b0248","ref":"refs/heads/pv-qa","pushedAt":"2023-05-30T16:10:46.913Z","pushType":"push","commitsCount":2,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"split and saved conversation data","shortMessageHtmlLink":"split and saved conversation data"}},{"before":"de8616c6f664cf9f96b81f1a1f63ac7d8ddfdb19","after":"c5a38e4c96d297068d76a28e98da064cbe8a801f","ref":"refs/heads/main","pushedAt":"2023-05-30T15:21:20.386Z","pushType":"push","commitsCount":2,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"fix error in fulltext icsr creation dataset, add safetyreport metadata","shortMessageHtmlLink":"fix error in fulltext icsr creation dataset, add safetyreport metadata"}},{"before":"0e9ffc4235079e68af316f853c7f713ab3cbbabe","after":"282f9c51697db6950fbc55dbcf7a682f4526a181","ref":"refs/heads/pv-qa","pushedAt":"2023-05-30T14:01:46.930Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"icsr extraction conversation","shortMessageHtmlLink":"icsr extraction conversation"}},{"before":"b3fffad3857d68a3aa1684edc0bd55a9841e29f8","after":"0e9ffc4235079e68af316f853c7f713ab3cbbabe","ref":"refs/heads/pv-qa","pushedAt":"2023-05-30T12:56:35.448Z","pushType":"push","commitsCount":2,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"create first pv conversations","shortMessageHtmlLink":"create first pv conversations"}},{"before":"ef05601af063d7e357299a49e4746e53d06069e2","after":"de8616c6f664cf9f96b81f1a1f63ac7d8ddfdb19","ref":"refs/heads/main","pushedAt":"2023-05-30T08:36:49.868Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"resolve merge conflict in raw statistics notebook","shortMessageHtmlLink":"resolve merge conflict in raw statistics notebook"}},{"before":"60aa33491fdcb0a43cf427fea73c7b3b90ac223d","after":"b3fffad3857d68a3aa1684edc0bd55a9841e29f8","ref":"refs/heads/pv-qa","pushedAt":"2023-05-24T13:33:06.161Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"add tiny validation and test set","shortMessageHtmlLink":"add tiny validation and test set"}},{"before":"c665b1f62fc3c2765210ab0981033f181503f19f","after":"60aa33491fdcb0a43cf427fea73c7b3b90ac223d","ref":"refs/heads/pv-qa","pushedAt":"2023-05-24T13:26:20.606Z","pushType":"push","commitsCount":1,"pusher":{"login":"KarelDO","name":"Karel D'Oosterlinck","path":"/KarelDO","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48281913?s=80&v=4"},"commit":{"message":"first draft of pvqa","shortMessageHtmlLink":"first draft of pvqa"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD7EPLOAA","startCursor":null,"endCursor":null}},"title":"Activity ยท KarelDO/BioDEX"}