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Assertion failure during Pkg.test("Feather") #21920

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tkelman opened this issue May 17, 2017 · 5 comments
Closed

Assertion failure during Pkg.test("Feather") #21920

tkelman opened this issue May 17, 2017 · 5 comments

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@tkelman
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tkelman commented May 17, 2017

Package bug or Julia bug? The assertion failure looks like it's been seen before on Travis (but not for a while?) at #17374 (comment)

$ rm -rf $HOME/Julia/jlpkgtmp && JULIA_PKGDIR=$HOME/Julia/jlpkgtmp ./julia --depwarn=no -e 'versioninfo(); Pkg.init(); Pkg.add("Feather"); Pkg.test("Feather")'
Julia Version 0.7.0-DEV.216
Commit 83b5261* (2017-05-17 06:33 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: Intel(R) Xeon(R) CPU E3-1241 v3 @ 3.50GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell)
  LAPACK: libopenblas64_
  LIBM: libopenlibm
  LLVM: libLLVM-3.9.1 (ORCJIT, haswell)
INFO: Initializing package repository /home/tkelman/Julia/jlpkgtmp/v0.7
INFO: Cloning METADATA from https://github.com/JuliaLang/METADATA.jl
INFO: Cloning cache of CategoricalArrays from https://github.com/JuliaData/CategoricalArrays.jl.git
INFO: Cloning cache of Compat from https://github.com/JuliaLang/Compat.jl.git
INFO: Cloning cache of DataArrays from https://github.com/JuliaStats/DataArrays.jl.git
INFO: Cloning cache of DataFrames from https://github.com/JuliaStats/DataFrames.jl.git
INFO: Cloning cache of DataStreams from https://github.com/JuliaData/DataStreams.jl.git
INFO: Cloning cache of DataStructures from https://github.com/JuliaCollections/DataStructures.jl.git
INFO: Cloning cache of Feather from https://github.com/JuliaStats/Feather.jl.git
INFO: Cloning cache of FileIO from https://github.com/JuliaIO/FileIO.jl.git
INFO: Cloning cache of FlatBuffers from https://github.com/JuliaData/FlatBuffers.jl.git
INFO: Cloning cache of GZip from https://github.com/JuliaIO/GZip.jl.git
INFO: Cloning cache of NullableArrays from https://github.com/JuliaStats/NullableArrays.jl.git
INFO: Cloning cache of Reexport from https://github.com/simonster/Reexport.jl.git
INFO: Cloning cache of SortingAlgorithms from https://github.com/JuliaCollections/SortingAlgorithms.jl.git
INFO: Cloning cache of SpecialFunctions from https://github.com/JuliaMath/SpecialFunctions.jl.git
INFO: Cloning cache of StatsBase from https://github.com/JuliaStats/StatsBase.jl.git
INFO: Cloning cache of WeakRefStrings from https://github.com/quinnj/WeakRefStrings.jl.git
INFO: Installing CategoricalArrays v0.1.3
INFO: Installing Compat v0.25.1
INFO: Installing DataArrays v0.5.1
INFO: Installing DataFrames v0.9.1
INFO: Installing DataStreams v0.1.3
INFO: Installing DataStructures v0.5.3
INFO: Installing Feather v0.2.5
INFO: Installing FileIO v0.3.1
INFO: Installing FlatBuffers v0.2.0
INFO: Installing GZip v0.3.0
INFO: Installing NullableArrays v0.1.0
INFO: Installing Reexport v0.0.3
INFO: Installing SortingAlgorithms v0.1.1
INFO: Installing SpecialFunctions v0.1.1
INFO: Installing StatsBase v0.14.1
INFO: Installing WeakRefStrings v0.2.0
INFO: Package database updated
INFO: Computing test dependencies for Feather...
INFO: Cloning cache of DataStreamsIntegrationTests from https://github.com/JuliaData/DataStreamsIntegrationTests.jl.git
INFO: Installing DataStreamsIntegrationTests v0.0.2
INFO: Testing Feather
WARNING: Method definition describe(AbstractArray{T, N} where N where T) in module StatsBase at /home/tkelman/Julia/jlpkgtmp/v0.7/StatsBase/src/scalarstats.jl:573 overwritten in module DataFrames at /home/tkelman/Julia/jlpkgtmp/v0.7/DataFrames/src/abstractdataframe/abstractdataframe.jl:407.
WARNING: Method definition describe(AbstractArray{T, N} where N where T) in module StatsBase at /home/tkelman/Julia/jlpkgtmp/v0.7/StatsBase/src/scalarstats.jl:573 overwritten in module DataFrames at /home/tkelman/Julia/jlpkgtmp/v0.7/DataFrames/src/abstractdataframe/abstractdataframe.jl:407.
WARNING: Method definition ==(Base.Nullable{S}, Base.Nullable{T}) in module Base at nullable.jl:238 overwritten in module NullableArrays at /home/tkelman/Julia/jlpkgtmp/v0.7/NullableArrays/src/operators.jl:128.
WARNING: Method definition ==(Base.Nullable{S}, Base.Nullable{T}) in module Base at nullable.jl:238 overwritten in module NullableArrays at /home/tkelman/Julia/jlpkgtmp/v0.7/NullableArrays/src/operators.jl:128.
WARNING: Method definition ==(Base.Nullable{S}, Base.Nullable{T}) in module Base at nullable.jl:238 overwritten in module NullableArrays at /home/tkelman/Julia/jlpkgtmp/v0.7/NullableArrays/src/operators.jl:128.
WARNING: Method definition describe(AbstractArray{T, N} where N where T) in module StatsBase at /home/tkelman/Julia/jlpkgtmp/v0.7/StatsBase/src/scalarstats.jl:573 overwritten in module DataFrames at /home/tkelman/Julia/jlpkgtmp/v0.7/DataFrames/src/abstractdataframe/abstractdataframe.jl:407.
WARNING: Method definition ==(Base.Nullable{S}, Base.Nullable{T}) in module Base at nullable.jl:238 overwritten in module NullableArrays at /home/tkelman/Julia/jlpkgtmp/v0.7/NullableArrays/src/operators.jl:128.
WARNING: This Feather file is old and will not be readable beyond the 0.3.0 release
julia: /home/tkelman/Julia/julia-0.7/src/julia.h:682: jl_value_t* jl_svecref(void*, size_t): Assertion `(((jl_value_t*)(((jl_taggedvalue_t*)((char*)(t) - sizeof(jl_taggedvalue_t)))->header & ~(uintptr_t)15))==(jl_value_t*)(jl_simplevector_type))' failed.

signal (6): Aborted
while loading /home/tkelman/Julia/jlpkgtmp/v0.7/Feather/test/runtests.jl, in expression starting on line 17
raise at /build/eglibc-oGUzwX/eglibc-2.19/signal/../nptl/sysdeps/unix/sysv/linux/raise.c:56
abort at /build/eglibc-oGUzwX/eglibc-2.19/stdlib/abort.c:89
__assert_fail_base at /build/eglibc-oGUzwX/eglibc-2.19/assert/assert.c:92
__assert_fail at /build/eglibc-oGUzwX/eglibc-2.19/assert/assert.c:101
jl_svecref at /home/tkelman/Julia/julia-0.7/src/julia.h:682
jl_svecref at /home/tkelman/Julia/julia-0.7/usr/include/llvm/ADT/ilist.h:418 [inlined]
emit_setfield at /home/tkelman/Julia/julia-0.7/src/cgutils.cpp:2237
emit_builtin_call at /home/tkelman/Julia/julia-0.7/src/codegen.cpp:3073
emit_call at /home/tkelman/Julia/julia-0.7/src/codegen.cpp:3441
emit_expr at /home/tkelman/Julia/julia-0.7/src/codegen.cpp:4139
emit_stmtpos at /home/tkelman/Julia/julia-0.7/src/codegen.cpp:4058 [inlined]
emit_function at /home/tkelman/Julia/julia-0.7/src/codegen.cpp:6242
jl_compile_linfo at /home/tkelman/Julia/julia-0.7/src/codegen.cpp:1256
jl_compile_for_dispatch at /home/tkelman/Julia/julia-0.7/src/gf.c:1665
jl_compile_method_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:316 [inlined]
jl_call_method_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:363 [inlined]
jl_apply_generic at /home/tkelman/Julia/julia-0.7/src/gf.c:1923
stream! at /home/tkelman/Julia/jlpkgtmp/v0.7/DataStreams/src/DataStreams.jl:239
unknown function (ip: 0x7feec72b721a)
jl_call_fptr_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:348 [inlined]
jl_call_method_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:367 [inlined]
jl_apply_generic at /home/tkelman/Julia/julia-0.7/src/gf.c:1923
#stream!#5 at /home/tkelman/Julia/jlpkgtmp/v0.7/DataStreams/src/DataStreams.jl:151
jl_call_fptr_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:348 [inlined]
jl_call_method_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:367 [inlined]
jl_apply_generic at /home/tkelman/Julia/julia-0.7/src/gf.c:1923
jl_apply at /home/tkelman/Julia/julia-0.7/src/julia.h:1422 [inlined]
jl_invoke at /home/tkelman/Julia/julia-0.7/src/gf.c:51
macro expansion at /home/tkelman/Julia/jlpkgtmp/v0.7/Feather/test/runtests.jl:19 [inlined]
anonymous at ./<missing> (unknown line)
jl_call_fptr_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:348 [inlined]
jl_call_method_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:367 [inlined]
jl_toplevel_eval_flex at /home/tkelman/Julia/julia-0.7/src/toplevel.c:587
jl_parse_eval_all at /home/tkelman/Julia/julia-0.7/src/ast.c:873
jl_load at /home/tkelman/Julia/julia-0.7/src/toplevel.c:614
include_from_node1 at ./loading.jl:569
unknown function (ip: 0x7feee36e6c0b)
jl_call_fptr_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:348 [inlined]
jl_call_method_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:367 [inlined]
jl_apply_generic at /home/tkelman/Julia/julia-0.7/src/gf.c:1923
include at ./sysimg.jl:14
unknown function (ip: 0x7feee356a90b)
jl_call_fptr_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:348 [inlined]
jl_call_method_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:367 [inlined]
jl_apply_generic at /home/tkelman/Julia/julia-0.7/src/gf.c:1923
process_options at ./client.jl:305
_start at ./client.jl:371
unknown function (ip: 0x7feee36f6438)
jl_call_fptr_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:348 [inlined]
jl_call_method_internal at /home/tkelman/Julia/julia-0.7/src/julia_internal.h:367 [inlined]
jl_apply_generic at /home/tkelman/Julia/julia-0.7/src/gf.c:1923
jl_apply at /home/tkelman/Julia/julia-0.7/ui/../src/julia.h:1422 [inlined]
true_main at /home/tkelman/Julia/julia-0.7/ui/repl.c:127
main at /home/tkelman/Julia/julia-0.7/ui/repl.c:264
__libc_start_main at /build/eglibc-oGUzwX/eglibc-2.19/csu/libc-start.c:287
unknown function (ip: 0x4015fa)
Allocations: 7261437 (Pool: 7259695; Big: 1742); GC: 9
====================================[ ERROR: Feather ]====================================

failed process: Process(`/home/tkelman/Julia/julia-0.7/usr/bin/julia -Cx86-64 -J/home/tkelman/Julia/julia-0.7/usr/lib/julia/sys.so --compile=yes --depwarn=no --check-bounds=yes --code-coverage=none --color=no --compilecache=yes /home/tkelman/Julia/jlpkgtmp/v0.7/Feather/test/runtests.jl`, ProcessSignaled(6)) [0]

==========================================================================================
INFO: Removing DataStreamsIntegrationTests v0.0.2
ERROR: Feather had test errors
This was referenced May 18, 2017
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@tkelman
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tkelman commented Jun 6, 2017

as far as I can tell this was not fixed by #21714, cc @quinnj

@vtjnash
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vtjnash commented Jun 6, 2017

fixed by #22019 (comment) and commit is marked for backport.

@tkelman
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tkelman commented Jun 7, 2017

that broke other packages and is not getting backported in full. which commit?

@tkelman
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tkelman commented Jun 7, 2017

and none of the bugfixes there have tests

@KristofferC
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Seems stale.

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@vtjnash @KristofferC @tkelman