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Parralel Computing #2 #17
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Hi Christoph, Thanks so much for your interest in Actually, I believe that However, with respect to Hope this helps for now and will get back to you after we think about this a little deeper. Thanks again, |
Dear JEFworks team,
Thank you very much for the great package.
As described in #15 , the first part of the pipeline to detect spatial patterns can be parallelized. Since the downstream steps such as filterSpatialPatterns and spatialCrossCorMatrix do not work genewise, I expect the mentioned block-wise processing of gene groups cannot be applied here.
Could you think of another way to parallelize these downstream steps?
I am currently working on a dataset with ~25.000 spots and 7.000 genes.
Thank you in advance,
Best,
Christoph
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