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Issues list

How to reuse variants converted from vcf to json for population genotyping?
#58 opened Nov 30, 2020 by malemay updated Nov 30, 2020
Can paragraph be used for indel from 2 bp to 30 bp?
#62 opened Apr 9, 2021 by 349539427 updated Apr 15, 2021
1
Error with idxdepth: "Assertion failed: _impl->header_contig_map.count(chr) != 0"
#64 opened May 4, 2021 by cassisnaro updated May 5, 2021
1
Missing key SEQ for <INS>
#65 opened May 14, 2021 by brentp updated Aug 11, 2021
6
--vcf-split option with no description
#66 opened Aug 25, 2021 by shangshanzhizhe updated Aug 25, 2021
grmpy error: [E::cram_itr_query]
#68 opened Oct 23, 2021 by jasonbhn updated Oct 23, 2021
index file
#69 opened Nov 11, 2021 by MehmetGoktay updated Nov 11, 2021
How to merge multi-samples SVs and obtain breakpoints for genotyping a population
#71 opened May 7, 2022 by Zhiliang-Zhang updated May 7, 2022
no BGZF EOF marker
#72 opened May 30, 2022 by xuefenfei712 updated May 30, 2022
[E::idx_find_and_load] Could not retrieve index file
#59 opened Jan 13, 2021 by Xuelei-Dai updated Jun 8, 2022
7
Install paragraph
#73 opened Jun 20, 2022 by vanhoan310 updated Jun 20, 2022
Stop using Werror and Wall
#74 opened Nov 20, 2022 by dpryan79 updated Nov 20, 2022
Genotyping for SNP
#75 opened Dec 14, 2022 by Wangchangsh updated Dec 14, 2022
Error when working with --ins-info-key
#78 opened Feb 28, 2023 by nvnieuwk updated Mar 1, 2023
1
Add support for VCFv4.2 breakend notation
#79 opened Mar 2, 2023 by nvnieuwk updated Mar 2, 2023
Issue's with Native Build and Boost
#80 opened Aug 7, 2023 by david2905 updated Aug 7, 2023
Exception: Different padding base for REF and ALT
#61 opened Mar 14, 2021 by srbehera updated Sep 15, 2023
6
Format error in vcf line:
#81 opened Aug 30, 2023 by mrwangyz updated Nov 22, 2023
3
Problem starting the script multigrmpy.py
#77 opened Jan 19, 2023 by aaaniich updated Jan 29, 2024
2
[BUG] Error adding alt from insertion sequence representing a duplication
#82 opened Mar 27, 2024 by rickymagner updated Mar 27, 2024
Errors on idxdepth
#60 opened Mar 1, 2021 by Yexin-Zhang updated Jun 21, 2024
4
Distance between vcf position and chrom start is smaller than read length.
#83 opened Jun 22, 2024 by pingxinxing updated Jun 22, 2024
BAM header only has a subset of the reference chromosomes -- please make sure they match!
#84 opened Jun 22, 2024 by pingxinxing updated Jun 22, 2024
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