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load_remote_dataset.py
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load_remote_dataset.py
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"""
Internal function to load GMT remote datasets.
"""
from __future__ import annotations
from typing import TYPE_CHECKING, ClassVar, NamedTuple
from pygmt.exceptions import GMTInvalidInput
from pygmt.helpers import kwargs_to_strings
from pygmt.io import load_dataarray
from pygmt.src import grdcut, which
if TYPE_CHECKING:
import xarray as xr
class Resolution(NamedTuple):
"""
Resolution code, the available grid registrations and whether it is tiled.
Attributes
----------
code : str
The resolution code. E.g., "01d", "30m", "01s".
registrations : list
A list of the accepted registrations for a given resolution. Can be either
"pixel" or "gridline".
tiled : bool
States if the grid is tiled, which requires an argument for ``region``.
"""
code: str
registrations: ClassVar[list] = ["gridline", "pixel"]
tiled: bool = False
class GMTRemoteDataset(NamedTuple):
"""
Standard information about a dataset and grid metadata.
Attributes
----------
title : str
The title of the dataset, used in error messages.
name : str
The name assigned as an attribute to the DataArray.
long_name : str
The long name assigned as an attribute to the DataArray.
units : str
The units of the values in the DataArray.
resolutions : dict
Dictionary of available resolution as keys and Resolution objects as values.
extra_attributes : dict
A dictionary of extra or unique attributes of the dataset.
"""
title: str
name: str
long_name: str
units: str | None
resolutions: dict[str, Resolution]
extra_attributes: dict
datasets = {
"earth_age": GMTRemoteDataset(
title="seafloor age",
name="seafloor_age",
long_name="age of seafloor crust",
units="Myr",
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", registrations=["gridline"], tiled=True),
},
),
"earth_free_air_anomaly": GMTRemoteDataset(
title="free air anomaly",
name="free_air_anomaly",
long_name="IGPP Earth Free-Air Anomaly",
units="mGal",
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", registrations=["pixel"], tiled=True),
},
),
"earth_geoid": GMTRemoteDataset(
title="Earth geoid",
name="earth_geoid",
long_name="EGM2008 Earth Geoid",
units="m",
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", registrations=["gridline"], tiled=True),
},
),
"earth_magnetic_anomaly": GMTRemoteDataset(
title="Earth magnetic anomaly",
name="magnetic_anomaly",
long_name="Earth magnetic anomaly",
units="nT",
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", registrations=["pixel"], tiled=True),
},
),
"earth_mask": GMTRemoteDataset(
title="Earth mask",
name="earth_mask",
long_name="Mask of land and water features",
units=None,
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m"),
"04m": Resolution("04m"),
"03m": Resolution("03m"),
"02m": Resolution("02m"),
"01m": Resolution("01m"),
"30s": Resolution("30s"),
"15s": Resolution("15s"),
},
),
"earth_relief": GMTRemoteDataset(
title="Earth relief",
name="elevation",
long_name="Earth elevation relative to the geoid",
units="meters",
extra_attributes={"vertical_datum": "EGM96", "horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", tiled=True),
"30s": Resolution("30s", tiled=True),
"15s": Resolution("15s", registrations=["pixel"], tiled=True),
"03s": Resolution("03s", registrations=["gridline"], tiled=True),
"01s": Resolution("01s", registrations=["gridline"], tiled=True),
},
),
"earth_vgg": GMTRemoteDataset(
title="Earth vertical gravity gradient",
name="earth_vgg",
long_name="IGPP Earth Vertical Gravity Gradient",
units="Eotvos",
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", registrations=["pixel"], tiled=True),
},
),
"earth_wdmam": GMTRemoteDataset(
title="WDMAM magnetic anomaly",
name="wdmam",
long_name="World Digital Magnetic Anomaly Map",
units="nT",
extra_attributes={"horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", registrations=["gridline"], tiled=True),
},
),
"mars_relief": GMTRemoteDataset(
title="Mars relief",
name="mars_relief",
long_name="NASA Mars (MOLA) relief",
units="meters",
extra_attributes={},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", tiled=True),
"30s": Resolution("30s", tiled=True),
"15s": Resolution("15s", tiled=True),
"12s": Resolution("12s", registrations=["pixel"], tiled=True),
},
),
"moon_relief": GMTRemoteDataset(
title="Moon relief",
name="moon_relief",
long_name="USGS Moon (LOLA) relief",
units="meters",
extra_attributes={},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", tiled=True),
"30s": Resolution("30s", tiled=True),
"15s": Resolution("15s", tiled=True),
"14s": Resolution("14s", registrations=["pixel"], tiled=True),
},
),
"mercury_relief": GMTRemoteDataset(
title="Mercury relief",
name="mercury_relief",
long_name="USGS Mercury relief",
units="meters",
extra_attributes={},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", tiled=True),
"56s": Resolution("56s", registrations=["pixel"], tiled=True),
},
),
"pluto_relief": GMTRemoteDataset(
title="Pluto relief",
name="pluto_relief",
long_name="USGS Pluto relief",
units="meters",
extra_attributes={},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", tiled=True),
"52s": Resolution("52s", registrations=["pixel"], tiled=True),
},
),
"venus_relief": GMTRemoteDataset(
title="Venus relief",
name="venus_relief",
long_name="NASA Magellan Venus relief",
units="meters",
extra_attributes={},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", registrations=["gridline"], tiled=True),
},
),
}
@kwargs_to_strings(region="sequence")
def _load_remote_dataset(
dataset_name: str,
dataset_prefix: str,
resolution: str,
region: str | list,
registration: str,
) -> xr.DataArray:
r"""
Load GMT remote datasets.
Parameters
----------
dataset_name
The name for the dataset in the 'datasets' dictionary.
dataset_prefix
The prefix for the dataset that will be passed to the GMT C API.
resolution
The grid resolution. The suffix ``d``, ``m``, and ``s`` stand for arc-degrees,
arc-minutes, and arc-seconds, respectively.
region
The subregion of the grid to load, in the form of a list
[*xmin*, *xmax*, *ymin*, *ymax*] or a string *xmin/xmax/ymin/ymax*.
Required for tiled grids.
registration
Grid registration type. Either ``"pixel"`` for pixel registration or
``"gridline"`` for gridline registration. Default is ``None``, where
a gridline-registered grid is returned unless only the pixel-registered grid
is available.
Returns
-------
grid : :class:`xarray.DataArray`
The GMT remote dataset grid.
Note
----
The returned :class:`xarray.DataArray` doesn't support slice operation for tiled
grids.
"""
dataset = datasets[dataset_name]
if resolution not in dataset.resolutions:
raise GMTInvalidInput(
f"Invalid resolution '{resolution}' for {dataset.title} dataset. "
f"Available resolutions are: {', '.join(dataset.resolutions)}."
)
# check registration
valid_registrations = dataset.resolutions[resolution].registrations
if registration is None:
# use gridline registration unless only pixel registration is available
registration = "gridline" if "gridline" in valid_registrations else "pixel"
elif registration in ("pixel", "gridline"):
if registration not in valid_registrations:
raise GMTInvalidInput(
f"{registration} registration is not available for the "
f"{resolution} {dataset.title} dataset. Only "
f"{valid_registrations[0]} registration is available."
)
else:
raise GMTInvalidInput(
f"Invalid grid registration: '{registration}', should be either 'pixel', "
"'gridline' or None. Default is None, where a gridline-registered grid is "
"returned unless only the pixel-registered grid is available."
)
reg = f"_{registration[0]}"
# different ways to load tiled and non-tiled grids.
# Known issue: tiled grids don't support slice operation
# See https://github.com/GenericMappingTools/pygmt/issues/524
if region is None:
if dataset.resolutions[resolution].tiled:
raise GMTInvalidInput(
f"'region' is required for {dataset.title} resolution '{resolution}'."
)
fname = which(f"@{dataset_prefix}{resolution}{reg}", download="a")
grid = load_dataarray(fname, engine="netcdf4")
else:
grid = grdcut(f"@{dataset_prefix}{resolution}{reg}", region=region)
# Add some metadata to the grid
grid.name = dataset.name
grid.attrs["long_name"] = dataset.long_name
if dataset.units:
grid.attrs["units"] = dataset.units
for key, value in dataset.extra_attributes.items():
grid.attrs[key] = value
# Remove the actual range because it gets outdated when indexing the grid, which
# causes problems when exporting it to netCDF for usage on the command-line.
grid.attrs.pop("actual_range", None)
for coord in grid.coords:
grid[coord].attrs.pop("actual_range", None)
return grid