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bashrc_for_gmt
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bashrc_for_gmt
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#
# .bashrc include file for simplifying GMT building and testing
# from the bash command line for debug compiler settings
# (dbuild directory), a release build (rbuild directory),
# and XCode debugging (xbuild directory).
#
# Include in your .bashrc via source <path>/bashrc_for_gmt
#
# Examples:
# Type "bnd" to pull the latest main, configure with cmake, and build
# with debug settings, or "bnx" for the Xcode setup
# Type "crb" to run all tests with the release build
# Type "gmtfind 'pattern'" to find all files where 'pattern' occurs
# Type "dlog" to open the latest test log
# Type "vgd" to open all the failed test PNGs for build
#
# You must set these parameter to reflect your setup
builder=ninja # If ninja is not installed (please do), set to make
Bname="Ninja" # If ninja is not installed (please do), set to "Unix Makefiles"
pngview=open # Program that can open and display PNG files
pdfview=open # Program that can open and display PDF files
ncores=4 # Number of cores for running tests
MATLAB=/Applications/MATLAB_R2019a.app # Path to the Matlab app
REPO_DIR=<path to the local GMT repository>
DATA_DIR=<path to directory containing GSHHG and DCW>
EDITOR=subl # Program that can open and display text files
#--------------------------------------------------------------
# These are needed to run admin/build-gmt-release.sh
export GMT_REPO_DIR=${REPO_DIR}
export GMT_GSHHG_SOURCE=${DATA_DIR}/gshhg-gmt-2.3.7
export GMT_DCW_SOURCE=${DATA_DIR}/dcw-gmt-2.0.0
# To run matlab without the GUI:
alias matlab='$MATLAB/bin/matlab -nojvm'
# function for processing find output and return list of unique files.
function unique {
awk -F: '{print $1}' | sort -u
}
# List source, docs, scripts and txt files where the argument to gmtfind appears as is in the file
# e.g, gmtfind "Grid increment is"
function gmtfind {
find . -name '*.[ch]' -exec egrep -H "$*" {} \; | unique ;
find . -name '*.in]' -exec egrep -H "$*" {} \; | unique ;
find . -name '*.txt]' -exec egrep -H "$*" {} \; | unique ;
find . -name '*.rst*' -exec egrep -H "$*" {} \; | unique ;
find . -name '*.sh' -exec egrep -H "$*" {} \; | unique ;
find . -name '*.bat' -exec egrep -H "$*" {} \; | unique ;
}
# Various GMT building aliases
# To run cmake for GMT for various setups
alias cmakegmtd='cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Debug ..' # Configure cmake for debug
alias cmakegmtr='cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Release ..' # Configure cmake for release
alias cmakegmtx='cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Debug -G Xcode ..' # Configure cmake for Xcode debug
# To change folders, open logs, build docs
alias gmt6='cd ${REPO_DIR}/src' # Cd to the GMT source directory
alias gtop='cd ${REPO_DIR}' # Cd to the top of the dev tree
alias dlog='pushd .; gtop; ${EDITOR} dbuild/Testing/Temporary/LastTest.log; popd' # Open the dbuild check error log
alias rlog='pushd .; gtop; ${EDITOR} rbuild/Testing/Temporary/LastTest.log; popd' # Open the rbuild check error log
alias bdoc='pushd .; gmt6; cd ../dbuild; ${builder} -j${ncores} docs_html install; popd'
# To pull changes, rebuild existing build directories
alias buildd='pushd .; gtop; git pull; cd dbuild; ${builder} -j${ncores} install; popd' # Pull changes and rebuild existing dbuild
alias buildr='pushd .; gtop; git pull; cd rbuild; ${builder} -j${ncores} install; popd' # Pull changes and rebuild existing rbuild
# To pull changes, delete and remake build directories
alias buildnewd='pushd .; gtop; git pull; rm -rf dbuild; mkdir dbuild; cd dbuild; cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Debug -G ${Bname} ..; ${builder} -j${ncores} install; popd' # Pull changes; delete and recreate build directory (debug)
alias buildnewr='pushd .; gtop; git pull; rm -rf rbuild; mkdir rbuild; cd rbuild; cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Release -G ${Bname} ..; ${builder} -j${ncores} install; popd' # Pull changes; delete and recreate build directory (release)
alias buildnewx='pushd .; gtop; git pull; rm -rf xbuild; mkdir xbuild; cd xbuild; cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Debug -G Xcode ..; xcodebuild; popd' # Pull changes; delete and recreate build directory (XCode)
# To rebuild without pulling remote changes
alias builddnopull='pushd .; gtop; cd dbuild; ${builder} -j${ncores} install; popd' # Rebuild existing dbuild
alias buildnewdnopull='pushd .; gtop; rm -rf dbuild; mkdir dbuild; cd dbuild; cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Debug -G ${Bname} ..; ${builder} -j${ncores} install; popd' # Delete and recreate build directory (debug)
alias buildnewxnopull='pushd .; gtop; rm -rf xbuild; mkdir xbuild; cd xbuild; cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Debug -G Xcode ..; xcodebuild; popd' # Delete and recreate build directory (XCode)
# To run tests
alias checkdbuild='pushd .; gtop; cd dbuild; ${builder} -j${ncores} check; popd' # Run the tests for dbuild
alias checkrbuild='pushd .; gtop; cd rbuild; ${builder} -j${ncores} check; popd' # Run the tests for rbuild
# If gcc-mp is installed you can do OpenMP builds
alias buildnewr-mp='pushd .; gtop; git pull; rm -rf rbuild-mp; mkdir rbuild-mp; cd rbuild-mp; cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Release -G ${Bname} -C ~/cache.cmake ..; ${builder} -j${ncores} install; popd'
alias buildnewd-mp='pushd .; gtop; git pull; rm -rf dbuild-mp; mkdir dbuild-mp; cd dbuild-mp; cmake -DCMAKE_INSTALL_PREFIX=gmt6 -DCMAKE_BUILD_TYPE=Release -G ${Bname} -C ~/cache.cmake ..; ${builder} -j${ncores} install; popd'
# Shorter aliases for the build aliases
alias bd=buildd # Pull changes and rebuild existing dbuild
alias br=buildr # Pull changes and rebuild existing rbuild
alias bnd=buildnewd # Pull changes; delete and recreate dbuild
alias bnr=buildnewr # Pull changes; delete and recreate rbuild
alias bnx=buildnewx # Pull changes; delete and recreate xbuild
alias bnd-mp=buildnewd-mp # Pull changes; delete and rebuild dbuild with OpenMP
alias bnr-mp=buildnewr-mp # Pull changes; delete and rebuild rbuild with OpenMP
alias cdb=checkdbuild # Run the tests for dbuild
alias crb=checkrbuild # Run the tests for rbuild
alias bmdc='buildnewd; checkdbuild' # build new master debug and run all tests
alias bdnp=builddnopull # Rebuild existing dbuild
alias bndnp=buildnewdnopull # delete and recreate dbuild
alias bnxnp=buildnewxnopull # delete and recreate xbuild
# See test results
alias vpngdbuild='pushd .; gtop; cd dbuild; $pngview */*/*/*.png; $pngview */*/*/*/*.png; popd'
alias vpdfdbuild='pushd .; gtop; cd dbuild; $pdfview */*/*/*.pdf; $pdfview */*/*/*/*.pdf; popd'
alias vpngrbuild='pushd .; gtop; cd rbuild; $pngview */*/*/*.png; $pngview */*/*/*/*.png; popd'
alias vpdfrbuild='pushd .; gtop; cd rbuild; $pdfview */*/*/*.pdf; $pdfview */*/*/*/*.pdf; popd'
# Very short shortnamds for seeing test results
alias vgd=vpngdbuild
alias vpd=vpdfdbuild
alias vgr=vpngrbuild
alias vpr=vpdfrbuild
# View large sets of failures one at the time with gap in time between launch:
# View all release PNG failures one at the time with given sleep gap [3s]
function view_png_failures_r {
if [ "X$1" == "X" ]; then
w=3
else
w=$1
fi
pushd .; gtop; cd rbuild;
ls */*/*/*.png */*/*/*/*.png > /tmp/vpf
while read png; do
$pngview $png
sleep $w
done < /tmp/vpf
rm -f /tmp/vpf
popd
}
# View all release PDF failures one at the time with given sleep gap [3s]
function view_pdf_failures_r {
if [ "X$1" == "X" ]; then
w=3
else
w=$1
fi
pushd .; gtop; cd rbuild;
ls */*/*/*.pdf */*/*/*/*.pdf > /tmp/vpf
while read pdf; do
$pdfview $pdf
sleep $w
done < /tmp/vpf
rm -f /tmp/vpf
popd
}