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Pull requests: GeneDx/txt2hpo

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Pull requests list

bugifx/mismapped term
#15 by vgainullin was merged Feb 8, 2020 Loading…
Add memory-friendly handling of large text sizes
#3 by vgainullin was merged Nov 22, 2019 Loading…
pairwise distance for each phenotype extracted from a single doc
#4 by arvkevi was merged Nov 25, 2019 Loading…
add phenotype distance tests
#5 by vgainullin was merged Dec 9, 2019 Loading…
add aggregation of phenotype distances
#6 by vgainullin was merged Dec 10, 2019 Loading…
fix multi-word extraction bug
#7 by vgainullin was merged Jan 20, 2020 Loading…
add filtering of joined phen groups using sequence completeness
#8 by vgainullin was merged Jan 21, 2020 Loading…
add timing tests
#9 by vgainullin was merged Jan 24, 2020 Loading…
adjust preset recombine group parameters
#10 by vgainullin was merged Jan 28, 2020 Loading…
fix chunk size bug
#11 by vgainullin was merged Jan 28, 2020 Loading…
remove unnecessary check
#12 by vgainullin was merged Jan 28, 2020 Loading…
Feature/resolve collisions
#13 by vgainullin was merged Feb 5, 2020 Loading…
index now reflecting character span
#1 by vgainullin was merged Nov 5, 2019 Loading…
fix bug with double counting auxillary verbs + phenotype
#14 by vgainullin was merged Feb 5, 2020 Loading…
Feature/custom synonyms
#16 by vgainullin was merged Feb 8, 2020 Loading…
Refactor/extract
#17 by vgainullin was merged Feb 18, 2020 Loading…
21
Feature/negation
#18 by vgainullin was merged Feb 21, 2020 Loading…
Docs/update readme
#19 by vgainullin was merged Feb 24, 2020 Loading…
Update README.md
#20 by vgainullin was merged Feb 24, 2020 Loading…
fix bug where capitalizated terms didnt align with parsing dictionary
#21 by vgainullin was merged Mar 10, 2020 Loading…
add remove_overlapping method
#22 by vgainullin was merged Mar 11, 2020 Loading…
fix errors in extracting all caps phenotypes
#23 by vgainullin was merged Mar 11, 2020 Loading…
fix bug where one phenotype was matching two different hpids
#24 by vgainullin was merged Mar 12, 2020 Loading…
remove "absent" from chunk_prefix
#25 by vgainullin was merged Mar 13, 2020 Loading…
61-Use a cross-platform reference to HOME directory in config.py
#62 by rebeccaito was merged Feb 21, 2023 Loading…
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