Commits

Commits on Jun 18, 2024

Merge branch 'master' of github.com:Garcia-Carbonero-Lab/varca
carcarre11
committedJun 18, 2024

Commits on Apr 16, 2024

Update config-example.yaml
ELENAPINEIRO
committedApr 16, 2024
Combined commit: FastQC modification
ELENAPINEIRO
committedApr 16, 2024

Commits on Apr 3, 2024

Edit MarkDuplicates example parameter
ELENAPINEIRO
committedApr 3, 2024
Update the minimum required version of Snakemake
ELENAPINEIRO
committedApr 3, 2024
fix SyntaxWarning: invalid escape sequence
ELENAPINEIRO
committedApr 3, 2024
errors and warnings for some parameters of the config file
ELENAPINEIRO
committedApr 3, 2024
reorganize SnpEff parameters in config file
ELENAPINEIRO
committedApr 3, 2024
same name for resources in config and in rules
ELENAPINEIRO
committedApr 3, 2024
Combined commits: retrieve threads, memory and time in all rules
ELENAPINEIRO
committedApr 3, 2024
Combined commits: add benchmarking to rules
ELENAPINEIRO
committedApr 3, 2024
Combined commits: replacement of shell rules with available wrappers
ELENAPINEIRO
committedApr 3, 2024
Combined commits: update wrappers
ELENAPINEIRO
committedApr 3, 2024
adapt code to Snakemake version 8.6.0
ELENAPINEIRO
committedApr 3, 2024

Commits on Jul 11, 2023

Version updates++ (cnio-bu#18 )
ELENAPINEIRO
committedJul 11, 2023

Commits on May 9, 2023

Update README.md
ELENAPINEIRO
committedMay 9, 2023

Commits on Mar 15, 2023

fix varca
carcarre11
committedMar 15, 2023

Commits on Mar 13, 2023

fix learn orientation model
carcarre11
committedMar 13, 2023

Commits on Mar 8, 2023

update walltime to new runtime
carcarre11
committedMar 8, 2023
change priority of channels
carcarre11
committedMar 8, 2023

Commits on Feb 21, 2023

Push snpEFF download wrapper version (cnio-bu#5 )
SGMartin
committedFeb 21, 2023

Commits on Nov 25, 2022

Shadow map-reads output (cnio-bu#3 )
SGMartin
committedNov 25, 2022

Commits on Oct 6, 2022

Commits on May 6, 2022

fix retrieval of VCF files for group processing
ELENAPINEIRO
committedMay 6, 2022
fix retrieval of VCF files for group processing
ELENAPINEIRO
committedMay 6, 2022

Commits on May 3, 2022

update IndexFeatureFile rule
ELENAPINEIRO
committedMay 3, 2022

Commits on Apr 27, 2022

Update samples-example.tsv
ELENAPINEIRO
committedApr 27, 2022

Commits on Apr 25, 2022

Update README.md
ELENAPINEIRO
committedApr 25, 2022
Update README.md
ELENAPINEIRO
committedApr 25, 2022
Update README.md
ELENAPINEIRO
committedApr 25, 2022
Update README.md
ELENAPINEIRO
committedApr 25, 2022

Commits on Apr 12, 2022

minimum Snakemake version requirement
ELENAPINEIRO
committedApr 12, 2022

Commits on Mar 21, 2022

Allow the grouping of samples

ELENAPINEIRO
authored and
tdido
committedMar 21, 2022

Commits on Mar 15, 2022

Reador
ELENAPINEIRO
committedMar 15, 2022