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Issues list

Number of bisulfite transformed reads are not equal between Reads 1 and 2
#657 opened Feb 27, 2024 by itsjoeka
6
Linear memory growth during alignment.
#638 opened Nov 13, 2023 by iromeo
3
Methylation extractor stuck
#644 opened Dec 20, 2023 by xbarvazx
4
bismark bowtie2
#645 opened Dec 27, 2023 by yhj-j
3
MAPQ Filtering Post Alignment Using --local Parameter
#646 opened Jan 2, 2024 by allenloong
2
question about difference of detected cytosine sites between CX_report.txt and bismark.cov.gz
#647 opened Jan 3, 2024 by yinzhuo0322
4
advice on data analysis
#649 opened Jan 11, 2024 by riyabelani
1
Is are ways to decrease the memory requirement of coverage2cytosine at the expense of computation time?
#650 opened Feb 2, 2024 by onurcanbektas
2
Bismark issues 0.24.2
#652 opened Feb 13, 2024 by NeGomics
7
Bismark Alignment Inquiry
#654 opened Feb 16, 2024 by KeemAntonio
10
Mapping efficiency: 0.0%; bowtie2-align exited with value 141
#607 opened Aug 1, 2023 by nstepi62
1
Multi-mapping reads and low mapping efficiency
#656 opened Feb 20, 2024 by hAmbreen
3
pipe with bismark_methylation_extractor
#660 opened Mar 6, 2024 by jksr
1
Bismark Extract failed always ran out of memory after 8hrs.
#662 opened Mar 13, 2024 by RachaelAjayi
4
Some trouble with the FastQC report
#667 opened Apr 29, 2024 by Citrusyh
3
FATAL ERROR in extractor
#668 opened Apr 30, 2024 by WYChen-penguin
5
CpG count query
#669 opened May 5, 2024 by MarkOEze
4
Bismark Alignment very slow
#670 opened May 13, 2024 by Nitin123-4
7
Issue with bismark_genome_prep
#672 opened Jun 12, 2024 by maf222
7
Spiky position in the M-Bias plot
#673 opened Jun 13, 2024 by neolithlee
3
help combining bismark pipeline with methylated UMIs
#680 opened Jun 25, 2024 by shawpa
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