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Issues list

How to map to homologous chromosomes?
#625 by ellisztamas was closed Sep 21, 2023
3
A problem when running bismark using the test_R1.fastq.gz、test_R2.fastq.gz
#624 by hazel914 was closed Sep 12, 2023
3
output file has only R1 pair end
#623 by JHBI115 was closed Sep 14, 2023
5
Seeking assistance with the "bismark_methylation_extractor" command.
#622 by dianzhiyong was closed Sep 27, 2023
5
Getting GC context methylation report
#621 by erlitzkin was closed Sep 9, 2023
5
CX report
#620 by ceromova was closed Sep 27, 2023
1
Issue with bismark_methylation_extractor
#619 by yingyin2019 was closed Sep 5, 2023
2
What to do in a case of low mapping efficiency ?
#618 by Emm2342 was closed Sep 27, 2023
3
<singles> option doesn't produce per-file BAMs
#615 by lyijin was closed Aug 23, 2023
1
Stage to merge biological replicates
#614 by hAmbreen was closed Aug 23, 2023
7
CA and GA conflation
#613 by anirudhjay was closed Aug 14, 2023
4
subprocess succeed but whole process failed
#612 by AlisaGU was closed Aug 14, 2023
5
Creating methylation file
#611 by husain223 was closed Sep 27, 2023
6
G->A conversion
#610 by AlisaGU was closed Aug 9, 2023
5
deduplicat_bismark with multiple bam files require samtools on environmental variable
#609 by Yoonsung1203 was closed Aug 7, 2023
1
suggestion for -p
#608 by AlisaGU was closed Aug 5, 2023
1
large genome
#606 by AlisaGU was closed Aug 7, 2023
1
higher than expected memory use
#605 by BenGSt was closed Oct 12, 2023
5
empty bam files - single end RRBS data
#604 by riyabelani was closed Jul 24, 2023
4
Extremly high memory usage
#603 by BenGSt was closed Jul 23, 2023
2
[Question]: Command line options for generating CX report
#602 by tamuanand was closed Jul 14, 2023
3
Methylation analysis of Nanopore data
#601 by ifalconi20 was closed Jul 17, 2023
10
Obtain the methylation percentage of a region of my amplicon.
#600 by ifalconi20 was closed Jul 11, 2023
1
Unknown option: directional Unknown option: ignore-quals Unknown option: no-mixed Unknown option: no-discordant
#599 by aijigekoukou-shen was closed Jul 9, 2023
1
Bismark Methylation % too high
#598 by chipmunk824 was closed Sep 27, 2023
1
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