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bsseq::read.bismark() input - reference error #640
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I am afraid this should really be asked elsewhere (maybe on the methylSig page?) |
I did ask the author of methylSig and I was told to post this question for Bismark: |
I am not sure to be honest, you seem to be using |
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Hi,
I am trying to use methylSig, and I am reading the input bedgraph files created with methylDackel. I used the same reference file for all of them, processed with the same commands. I was told that I can use bsseq::read.bismark() function to read my files, but when I read them
I get the error
Warning message:
In .merge_two_Seqinfo_objects(x, y) :
Each of the 2 combined objects has sequence levels not in the other:
Make sure to always combine/compare objects based on the same reference
genome (use suppressWarnings() to suppress this warning).
I repeat, I used the same reference file for all my files.
Thank you very much;
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