Update to gemBS v3

[berguner]

Hello,

As far as I can tell you created this pipeline based on gemBS v2. Are you planning to update it for gemBS v3?

Best,
Bekir

[Bek]

We are updating the workflow to work with GEM3. Working Dockerfile is in the following branch: https://github.com/ENCODE-DCC/wgbs-pipeline/tree/gemBS_v2. Built image can be pulled from quay.io/encode-dcc/wgbs-pipeline:gemBS_v2

[berguner]

Thanks for answering. I am looking forward for the update.

[paul-sud]

Hi @berguner , the pipeline is now in a final state using GEM3 if you are still interested.

[berguner]

Thank you Paul, I will give it a try.