forked from openemr/openemr
-
Notifications
You must be signed in to change notification settings - Fork 0
/
procedure_stats.php
604 lines (529 loc) · 19.3 KB
/
procedure_stats.php
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
<?php
/**
* This module creates statistical reports related to lab tests and
* other procedure orders.
*
* Copyright (C) 2010-2016 Rod Roark <[email protected]>
* Copyright (C) 2015 Roberto Vasquez <[email protected]>
* Copyright (C) 2017 Brady Miller <[email protected]>
*
* LICENSE: This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <https://opensource.org/licenses/gpl-license.php>;.
*
* @package OpenEMR
* @author Rod Roark <[email protected]>
* @author Roberto Vasquez <[email protected]>
* @author Brady Miller <[email protected]>
* @link https://www.open-emr.org
*/
require_once("../globals.php");
require_once("../../library/patient.inc");
require_once("../../library/acl.inc");
require_once("../../custom/code_types.inc.php");
require_once "$srcdir/options.inc.php";
// Might want something different here.
//
if (! acl_check('acct', 'rep')) die("Unauthorized access.");
$from_date = fixDate($_POST['form_from_date']);
$to_date = fixDate($_POST['form_to_date'], date('Y-m-d'));
$form_by = $_POST['form_by']; // this is a scalar
$form_show = $_POST['form_show']; // this is an array
$form_facility = isset($_POST['form_facility']) ? $_POST['form_facility'] : '';
$form_sexes = isset($_POST['form_sexes']) ? $_POST['form_sexes'] : '3';
$form_output = isset($_POST['form_output']) ? 0 + $_POST['form_output'] : 1;
if (empty($form_by)) $form_by = '4';
if (empty($form_show)) $form_show = array('1');
// One of these is chosen as the left column, or Y-axis, of the report.
//
$report_title = xl('Procedure Statistics Report');
$arr_by = array(
4 => xl('Specific Result'),
5 => xl('Followups Indicated'),
);
// This will become the array of reportable values.
$areport = array();
// This accumulates the bottom line totals.
$atotals = array();
$arr_show = array(
// '.total' => array('title' => 'Total Positives'),
'.tneg' => array('title' => 'Total Negatives'),
'.age' => array('title' => 'Age Category'),
); // info about selectable columns
$arr_titles = array(); // will contain column headers
// Query layout_options table to generate the $arr_show table.
// Table key is the field ID.
$lres = sqlStatement("SELECT field_id, title, data_type, list_id, description " .
"FROM layout_options WHERE " .
"form_id = 'DEM' AND uor > 0 AND field_id NOT LIKE 'em%' " .
"ORDER BY group_name, seq, title");
while ($lrow = sqlFetchArray($lres)) {
$fid = $lrow['field_id'];
if ($fid == 'fname' || $fid == 'mname' || $fid == 'lname') continue;
$arr_show[$fid] = $lrow;
$arr_titles[$fid] = array();
}
// Compute age in years given a DOB and "as of" date.
//
function getAge($dob, $asof='') {
if (empty($asof)) $asof = date('Y-m-d');
$a1 = explode('-', substr($dob , 0, 10));
$a2 = explode('-', substr($asof, 0, 10));
$age = $a2[0] - $a1[0];
if ($a2[1] < $a1[1] || ($a2[1] == $a1[1] && $a2[2] < $a1[2])) --$age;
// echo "<!-- $dob $asof $age -->\n"; // debugging
return $age;
}
$cellcount = 0;
function genStartRow($att) {
global $cellcount, $form_output;
if ($form_output != 3) echo " <tr $att>\n";
$cellcount = 0;
}
function genEndRow() {
global $form_output;
if ($form_output == 3) {
echo "\n";
}
else {
echo " </tr>\n";
}
}
function getListTitle($list, $option) {
$row = sqlQuery("SELECT title FROM list_options WHERE " .
"list_id = '$list' AND option_id = '$option' AND activity = 1");
if (empty($row['title'])) return $option;
return $row['title'];
}
// Usually this generates one cell, but allows for two or more.
//
function genAnyCell($data, $right=false, $class='') {
global $cellcount, $form_output;
if (!is_array($data)) {
$data = array(0 => $data);
}
foreach ($data as $datum) {
if ($form_output == 3) {
if ($cellcount) echo ',';
echo '"' . $datum . '"';
}
else {
echo " <td";
if ($class) echo " class='$class'";
if ($right) echo " align='right'";
echo ">$datum</td>\n";
}
++$cellcount;
}
}
function genHeadCell($data, $right=false) {
genAnyCell($data, $right, 'dehead');
}
// Create an HTML table cell containing a numeric value, and track totals.
//
function genNumCell($num, $cnum) {
global $atotals, $form_output;
$atotals[$cnum] += $num;
if (empty($num) && $form_output != 3) $num = ' ';
genAnyCell($num, true, 'detail');
}
// Helper function called after the reporting key is determined for a row.
//
function loadColumnData($key, $row) {
global $areport, $arr_titles, $from_date, $to_date, $arr_show;
// If no result, do nothing.
if (empty($row['abnormal'])) return;
// If first instance of this key, initialize its arrays.
if (empty($areport[$key])) {
$areport[$key] = array();
$areport[$key]['.prp'] = 0; // previous pid
$areport[$key]['.wom'] = 0; // number of positive results for women
$areport[$key]['.men'] = 0; // number of positive results for men
$areport[$key]['.neg'] = 0; // number of negative results
$areport[$key]['.age'] = array(0,0,0,0,0,0,0,0,0); // age array
foreach ($arr_show as $askey => $dummy) {
if (substr($askey, 0, 1) == '.') continue;
$areport[$key][$askey] = array();
}
}
// Flag this patient as having been encountered for this report row.
$areport[$key]['.prp'] = $row['pid'];
// Collect abnormal results only, except for a column of total negatives.
if ($row['abnormal'] == 'no') {
++$areport[$key]['.neg'];
return;
}
// Increment the correct sex category.
if (strcasecmp($row['sex'], 'Male') == 0)
++$areport[$key]['.men'];
else
++$areport[$key]['.wom'];
// Increment the correct age category.
$age = getAge(fixDate($row['DOB']), $row['date_ordered']);
$i = min(intval(($age - 5) / 5), 8);
if ($age < 11) $i = 0;
++$areport[$key]['.age'][$i];
// For each patient attribute to report, this increments the array item
// whose key is the attribute's value. This works well for list-based
// attributes. A key of "Unspecified" is used where the attribute has
// no assigned value.
foreach ($arr_show as $askey => $dummy) {
if (substr($askey, 0, 1) == '.') continue;
$status = empty($row[$askey]) ? 'Unspecified' : $row[$askey];
$areport[$key][$askey][$status] += 1;
$arr_titles[$askey][$status] += 1;
}
}
// This is called for each row returned from the query.
//
function process_result_code($row) {
global $areport, $arr_titles, $form_by;
// Specific Results. One row for each result name.
//
if ($form_by === '4') {
$key = $row['order_name'] . ' / ' . $row['result_name'];
loadColumnData($key, $row);
}
// Recommended followup services.
//
else if ($form_by === '5') {
if (!empty($row['related_code'])) {
$relcodes = explode(';', $row['related_code']);
foreach ($relcodes as $codestring) {
if ($codestring === '') continue;
// list($codetype, $code) = explode(':', $codestring);
// if ($codetype !== 'IPPF') continue;
$key = $codestring;
loadColumnData($key, $row);
}
}
}
} // end function process_result_code()
// If we are doing the CSV export then generate the needed HTTP headers.
// Otherwise generate HTML.
//
if ($form_output == 3) {
header("Pragma: public");
header("Expires: 0");
header("Cache-Control: must-revalidate, post-check=0, pre-check=0");
header("Content-Type: application/force-download");
header("Content-Disposition: attachment; filename=service_statistics_report.csv");
header("Content-Description: File Transfer");
}
else {
?>
<html>
<head>
<?php html_header_show(); ?>
<title><?php echo $report_title; ?></title>
<link rel="stylesheet" href="<?php echo $GLOBALS['assets_static_relative']; ?>/jquery-datetimepicker-2-5-4/build/jquery.datetimepicker.min.css">
<style type="text/css">
body { font-family:sans-serif; font-size:10pt; font-weight:normal }
.dehead { color:#000000; font-family:sans-serif; font-size:10pt; font-weight:bold }
.detail { color:#000000; font-family:sans-serif; font-size:10pt; font-weight:normal }
</style>
<script type="text/javascript" src="../../library/textformat.js?v=<?php echo $v_js_includes; ?>"></script>
<script type="text/javascript" src="<?php echo $GLOBALS['assets_static_relative']; ?>/jquery-min-3-1-1/index.js"></script>
<script type="text/javascript" src="<?php echo $GLOBALS['assets_static_relative']; ?>/jquery-datetimepicker-2-5-4/build/jquery.datetimepicker.full.min.js"></script>
<script language="JavaScript">
var mypcc = '<?php echo $GLOBALS['phone_country_code'] ?>';
$(document).ready(function() {
$('.datepicker').datetimepicker({
<?php $datetimepicker_timepicker = false; ?>
<?php $datetimepicker_showseconds = false; ?>
<?php $datetimepicker_formatInput = false; ?>
<?php require($GLOBALS['srcdir'] . '/js/xl/jquery-datetimepicker-2-5-4.js.php'); ?>
<?php // can add any additional javascript settings to datetimepicker here; need to prepend first setting with a comma ?>
});
});
</script>
</head>
<body leftmargin='0' topmargin='0' marginwidth='0' marginheight='0'>
<center>
<h2><?php echo $report_title; ?></h2>
<form name='theform' method='post' action='procedure_stats.php'>
<table border='0' cellspacing='5' cellpadding='1'>
<tr>
<td valign='top' class='dehead' nowrap>
<?php xl('Rows','e'); ?>:
</td>
<td valign='top' class='detail'>
<select name='form_by' title='Left column of report'>
<?php
foreach ($arr_by as $key => $value) {
echo " <option value='$key'";
if ($key == $form_by) echo " selected";
echo ">" . $value . "</option>\n";
}
?>
</select>
</td>
<td valign='top' class='dehead' nowrap>
<?php xl('Filters','e'); ?>:
</td>
<td rowspan='2' colspan='2' class='detail'
style='border-style:solid;border-width:1px;border-color:#cccccc'>
<table>
<tr>
<td valign='top' class='detail' nowrap>
<?php xl('Sex','e'); ?>:
</td>
<td class='detail' valign='top'>
<select name='form_sexes' title='<?php xl('To filter by sex','e'); ?>'>
<?php
foreach (array(3 => xl('Men and Women'), 1 => xl('Women Only'), 2 => xl('Men Only')) as $key => $value) {
echo " <option value='$key'";
if ($key == $form_sexes) echo " selected";
echo ">$value</option>\n";
}
?>
</select>
</td>
</tr>
<tr>
<td valign='top' class='detail' nowrap>
<?php xl('Facility','e'); ?>:
</td>
<td valign='top' class='detail'>
<?php dropdown_facility(strip_escape_custom($form_facility), 'form_facility', false); ?>
</td>
</tr>
<tr>
<td colspan='2' class='detail' nowrap>
<?php xl('From','e'); ?>
<input type='text' class='datepicker' name='form_from_date' id='form_from_date' size='10' value='<?php echo $from_date ?>'
title='Start date yyyy-mm-dd'>
<?php xl('To','e'); ?>
<input type='text' class='datepicker' name='form_to_date' id='form_to_date' size='10' value='<?php echo $to_date ?>'
title='End date yyyy-mm-dd'>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td valign='top' class='dehead' nowrap>
<?php xl('Columns','e'); ?>:
</td>
<td valign='top' class='detail'>
<select name='form_show[]' size='4' multiple
title='<?php xl('Hold down Ctrl to select multiple items','e'); ?>'>
<?php
foreach ($arr_show as $key => $value) {
$title = $value['title'];
if (empty($title) || $key == 'title') $title = $value['description'];
echo " <option value='$key'";
if (is_array($form_show) && in_array($key, $form_show)) echo " selected";
echo ">$title</option>\n";
}
?>
</select>
</td>
</tr>
<tr>
<td valign='top' class='dehead' nowrap>
<?php xl('To','e'); ?>:
</td>
<td colspan='3' valign='top' class='detail' nowrap>
<?php
foreach (array(1 => 'Screen', 2 => 'Printer', 3 => 'Export File') as $key => $value) {
echo " <input type='radio' name='form_output' value='$key'";
if ($key == $form_output) echo ' checked';
echo " />$value ";
}
?>
</td>
<td align='right' valign='top' class='detail' nowrap>
<input type='submit' name='form_submit' value='<?php xl('Submit','e'); ?>'
title='<?php xl('Click to generate the report','e'); ?>' />
</td>
</tr>
<tr>
<td colspan='5' height="1">
</td>
</tr>
</table>
<?php
} // end not export
if ($_POST['form_submit']) {
$pd_fields = '';
foreach ($arr_show as $askey => $asval) {
if (substr($askey, 0, 1) == '.') continue;
if ($askey == 'regdate' || $askey == 'sex' || $askey == 'DOB' ||
$askey == 'lname' || $askey == 'fname' || $askey == 'mname' ||
$askey == 'contrastart' || $askey == 'referral_source') continue;
$pd_fields .= ', pd.' . $askey;
}
$sexcond = '';
if ($form_sexes == '1') $sexcond = "AND pd.sex NOT LIKE 'Male' ";
else if ($form_sexes == '2') $sexcond = "AND pd.sex LIKE 'Male' ";
// This gets us all results, with encounter and patient
// info attached and grouped by patient and encounter.
$sqlBindArray = array();
$query = "SELECT " .
"po.patient_id, po.encounter_id, po.date_ordered, " .
"po.provider_id, pd.regdate, " .
"pd.sex, pd.DOB, pd.lname, pd.fname, pd.mname, " .
"pd.contrastart, pd.referral_source$pd_fields, " .
"ps.abnormal, " .
// "pto.name AS order_name, ptr.name AS result_name, ptr.related_code " .
"pc.procedure_name AS order_name, ptr.name AS result_name, ptr.related_code " .
"FROM procedure_order AS po " .
"JOIN form_encounter AS fe ON fe.pid = po.patient_id AND fe.encounter = po.encounter_id " .
"JOIN patient_data AS pd ON pd.pid = po.patient_id $sexcond" .
"JOIN procedure_order_code AS pc ON pc.procedure_order_id = po.procedure_order_id " .
"JOIN procedure_report AS pr ON pr.procedure_order_id = po.procedure_order_id " .
"AND pr.procedure_order_seq = pc.procedure_order_seq " .
"AND pr.date_report IS NOT NULL " .
"JOIN procedure_result AS ps ON ps.procedure_report_id = pr.procedure_report_id " .
"AND ps.result_status = 'final' " .
// "JOIN procedure_type AS pto ON pto.procedure_type_id = pc.procedure_type_id " .
"JOIN procedure_type AS ptr ON ptr.lab_id = po.lab_id AND ptr.procedure_code = ps.result_code " .
"AND ptr.procedure_type LIKE 'res%' " .
"WHERE po.date_ordered IS NOT NULL AND po.date_ordered >= ? " .
"AND po.date_ordered <= ? ";
array_push($sqlBindArray, $from_date, $to_date);
if ($form_facility) {
$query .= "AND fe.facility_id = ? ";
array_push($sqlBindArray, $form_facility);
}
$query .= "ORDER BY fe.pid, fe.encounter, ps.result_code"; // needed?
$res = sqlStatement($query, $sqlBindArray);
while ($row = sqlFetchArray($res)) {
process_result_code($row);
}
// Sort everything by key for reporting.
ksort($areport);
foreach ($arr_titles as $atkey => $dummy) ksort($arr_titles[$atkey]);
if ($form_output != 3) {
echo "<table border='0' cellpadding='1' cellspacing='2' width='98%'>\n";
} // end not csv export
genStartRow("bgcolor='#dddddd'");
// genHeadCell($arr_by[$form_by]);
// If the key is an MA or IPPF code, then add a column for its description.
if ($form_by === '5')
{
genHeadCell(array($arr_by[$form_by], xl('Description')));
} else {
genHeadCell($arr_by[$form_by]);
}
// Generate headings for values to be shown.
foreach ($form_show as $value) {
// if ($value == '.total') { // Total Positives
// genHeadCell(xl('Total'));
// }
if ($value == '.tneg') { // Total Negatives
genHeadCell(xl('Negatives'));
}
else if ($value == '.age') { // Age
genHeadCell(xl('0-10' ), true);
genHeadCell(xl('11-14'), true);
genHeadCell(xl('15-19'), true);
genHeadCell(xl('20-24'), true);
genHeadCell(xl('25-29'), true);
genHeadCell(xl('30-34'), true);
genHeadCell(xl('35-39'), true);
genHeadCell(xl('40-44'), true);
genHeadCell(xl('45+' ), true);
}
else if ($arr_show[$value]['list_id']) {
foreach ($arr_titles[$value] as $key => $dummy) {
genHeadCell(getListTitle($arr_show[$value]['list_id'],$key), true);
}
}
else if (!empty($arr_titles[$value])) {
foreach ($arr_titles[$value] as $key => $dummy) {
genHeadCell($key, true);
}
}
}
if ($form_output != 3) {
genHeadCell(xl('Positives'), true);
}
genEndRow();
$encount = 0;
foreach ($areport as $key => $varr) {
$bgcolor = (++$encount & 1) ? "#ddddff" : "#ffdddd";
$dispkey = $key;
// If the key is an MA or IPPF code, then get its description.
if ($form_by === '5')
{
list($codetype, $code) = explode(':', $key);
$type = $code_types[$codetype]['id'];
$dispkey = array($key, '');
$crow = sqlQuery("SELECT code_text FROM codes WHERE " .
"code_type = '$type' AND code = '$code' ORDER BY id LIMIT 1");
if (!empty($crow['code_text'])) $dispkey[1] = $crow['code_text'];
}
genStartRow("bgcolor='$bgcolor'");
genAnyCell($dispkey, false, 'detail');
// This is the column index for accumulating column totals.
$cnum = 0;
$totalsvcs = $areport[$key]['.wom'] + $areport[$key]['.men'];
// Generate data for this row.
foreach ($form_show as $value) {
// if ($value == '.total') { // Total Positives
// genNumCell($totalsvcs, $cnum++);
// }
if ($value == '.tneg') { // Total Negatives
genNumCell($areport[$key]['.neg'], $cnum++);
}
else if ($value == '.age') { // Age
for ($i = 0; $i < 9; ++$i) {
genNumCell($areport[$key]['.age'][$i], $cnum++);
}
}
else if (!empty($arr_titles[$value])) {
foreach ($arr_titles[$value] as $title => $dummy) {
genNumCell($areport[$key][$value][$title], $cnum++);
}
}
}
// Write the Total column data.
if ($form_output != 3) {
$atotals[$cnum] += $totalsvcs;
genAnyCell($totalsvcs, true, 'dehead');
}
genEndRow();
} // end foreach
if ($form_output != 3) {
// Generate the line of totals.
genStartRow("bgcolor='#dddddd'");
// genHeadCell(xl('Totals'));
// If the key is an MA or IPPF code, then add a column for its description.
if ($form_by === '5')
{
genHeadCell(array(xl('Totals'), ''));
} else {
genHeadCell(xl('Totals'));
}
for ($cnum = 0; $cnum < count($atotals); ++$cnum) {
genHeadCell($atotals[$cnum], true);
}
genEndRow();
// End of table.
echo "</table>\n";
}
} // end of if refresh or export
if ($form_output != 3) {
?>
</form>
</center>
<script language='JavaScript'>
<?php if ($form_output == 2) { ?>
var win = top.printLogPrint ? top : opener.top;
win.printLogPrint(window);
<?php } ?>
</script>
</body>
</html>
<?php
} // end not export
?>