4_1_1-to-4_1_2_upgrade.sql

--  Comment Meta Language Constructs:
--
--  #IfNotTable
--    argument: table_name
--    behavior: if the table_name does not exist,  the block will be executed

--  #IfTable
--    argument: table_name
--    behavior: if the table_name does exist, the block will be executed

--  #IfMissingColumn
--    arguments: table_name colname
--    behavior:  if the table exists but the column does not,  the block will be executed

--  #IfNotColumnType
--    arguments: table_name colname value
--    behavior:  If the table table_name does not have a column colname with a data type equal to value, then the block will be executed

--  #IfNotRow
--    arguments: table_name colname value
--    behavior:  If the table table_name does not have a row where colname = value, the block will be executed.

--  #IfNotRow2D
--    arguments: table_name colname value colname2 value2
--    behavior:  If the table table_name does not have a row where colname = value AND colname2 = value2, the block will be executed.

--  #IfNotRow3D
--    arguments: table_name colname value colname2 value2 colname3 value3
--    behavior:  If the table table_name does not have a row where colname = value AND colname2 = value2 AND colname3 = value3, the block will be executed.

--  #IfNotRow4D
--    arguments: table_name colname value colname2 value2 colname3 value3 colname4 value4
--    behavior:  If the table table_name does not have a row where colname = value AND colname2 = value2 AND colname3 = value3 AND colname4 = value4, the block will be executed.

--  #IfNotRow2Dx2
--    desc:      This is a very specialized function to allow adding items to the list_options table to avoid both redundant option_id and title in each element.
--    arguments: table_name colname value colname2 value2 colname3 value3
--    behavior:  The block will be executed if both statements below are true:
--               1) The table table_name does not have a row where colname = value AND colname2 = value2.
--               2) The table table_name does not have a row where colname = value AND colname3 = value3.

--  #IfRow2D
--    arguments: table_name colname value colname2 value2
--    behavior:  If the table table_name does have a row where colname = value AND colname2 = value2, the block will be executed.

--  #IfIndex
--    desc:      This function is most often used for dropping of indexes/keys.
--    arguments: table_name colname
--    behavior:  If the table and index exist the relevant statements are executed, otherwise not.

--  #IfNotIndex
--    desc:      This function will allow adding of indexes/keys.
--    arguments: table_name colname
--    behavior:  If the index does not exist, it will be created

--  #IfNotMigrateClickOptions
--    Custom function for the importing of the Clickoptions settings (if exist) from the codebase into the database

--  #EndIf
--    all blocks are terminated with a #EndIf statement.

#IfNotTable report_results
CREATE TABLE `report_results` (
  `report_id` bigint(20) NOT NULL,
  `field_id` varchar(31) NOT NULL default '',
  `field_value` text,
  PRIMARY KEY (`report_id`,`field_id`)
) ENGINE=MyISAM;
#EndIf

#IfMissingColumn version v_acl
ALTER TABLE `version` ADD COLUMN `v_acl` int(11) NOT NULL DEFAULT 0;
#EndIf

#IfMissingColumn documents_legal_detail dld_moved
ALTER TABLE `documents_legal_detail` ADD COLUMN `dld_moved` tinyint(4) NOT NULL DEFAULT '0'; 
#EndIf

#IfMissingColumn documents_legal_detail dld_patient_comments
ALTER TABLE `documents_legal_detail` ADD COLUMN `dld_patient_comments` text COMMENT 'Patient comments stored here';
#EndIf

#IfMissingColumn documents_legal_master dlm_upload_type
ALTER TABLE `documents_legal_master` ADD COLUMN `dlm_upload_type` tinyint(4) DEFAULT '0' COMMENT '0-Provider Uploaded,1-Patient Uploaded';
#EndIf

#IfMissingColumn list_options codes
ALTER TABLE `list_options` ADD COLUMN `codes` varchar(255) NOT NULL DEFAULT '';
UPDATE list_options SET `codes`='SNOMED-CT:449868002' WHERE list_id='smoking_status' AND option_id='1' AND title='Current every day smoker';
UPDATE list_options SET `codes`='SNOMED-CT:428041000124106' WHERE list_id='smoking_status' AND option_id='2' AND title='Current some day smoker';
UPDATE list_options SET `codes`='SNOMED-CT:8517006' WHERE list_id='smoking_status' AND option_id='3' AND title='Former smoker';
UPDATE list_options SET `codes`='SNOMED-CT:266919005' WHERE list_id='smoking_status' AND option_id='4' AND title='Never smoker';
UPDATE list_options SET `codes`='SNOMED-CT:77176002' WHERE list_id='smoking_status' AND option_id='5' AND title='Smoker, current status unknown';
UPDATE list_options SET `codes`='SNOMED-CT:266927001' WHERE list_id='smoking_status' AND option_id='9' AND title='Unknown if ever smoked';
#EndIf

#IfNotRow2Dx2 list_options list_id smoking_status option_id 15 title Heavy tobacco smoker
INSERT INTO list_options ( list_id, option_id, title, seq, is_default, codes ) VALUES ('smoking_status', '15', 'Heavy tobacco smoker', 70, 0, "SNOMED-CT:428071000124103");
#EndIf

#IfNotRow2Dx2 list_options list_id smoking_status option_id 16 title Light tobacco smoker
INSERT INTO list_options ( list_id, option_id, title, seq, is_default, codes ) VALUES ('smoking_status', '16', 'Light tobacco smoker', 80, 0, "SNOMED-CT:428061000124105");
#EndIf

#IfMissingColumn code_types ct_term
ALTER TABLE `code_types` ADD COLUMN ct_term tinyint(1) NOT NULL default 0 COMMENT '1 if this is a clinical term';
#EndIf

#IfNotRow code_types ct_key SNOMED-CT
DROP TABLE IF EXISTS `temp_table_one`;
CREATE TABLE `temp_table_one` (
  `id` int(11) NOT NULL DEFAULT '0',
  `seq` int(11) NOT NULL DEFAULT '0'
) ENGINE=MyISAM ;
INSERT INTO `temp_table_one` (`id`, `seq`) VALUES ( IF( ((SELECT MAX(`ct_id`) FROM `code_types`)>=100), ((SELECT MAX(`ct_id`) FROM `code_types`) + 1), 100 ) , IF( ((SELECT MAX(`ct_seq`) FROM `code_types`)>=100), ((SELECT MAX(`ct_seq`) FROM `code_types`) + 1), 100 )  );
INSERT INTO code_types (ct_key, ct_id, ct_seq, ct_mod, ct_just, ct_fee, ct_rel, ct_nofs, ct_diag, ct_active, ct_label, ct_external, ct_claim, ct_proc, ct_term ) VALUES ('SNOMED-CT' , (SELECT MAX(`id`) FROM `temp_table_one`), (SELECT MAX(`seq`) FROM `temp_table_one`), 0, '', 0, 0, 1, 0, 0, 'SNOMED Clinical Term', 7, 0, 0, 1);
DROP TABLE `temp_table_one`;
#EndIf

#IfNotColumnType codes code varchar(25)
ALTER TABLE `codes` CHANGE `code` `code` varchar(25) NOT NULL default '';
#EndIf

#IfNotColumnType billing code varchar(20)
ALTER TABLE `billing` CHANGE `code` `code` varchar(20) default NULL;
#EndIf

#IfNotColumnType ar_activity code varchar(20)
ALTER TABLE `ar_activity` CHANGE `code` `code` varchar(20) NOT NULL COMMENT 'empty means claim level';
#EndIf

#IfNotTable procedure_questions
CREATE TABLE `procedure_questions` (
  `lab_id`              bigint(20)   NOT NULL DEFAULT 0   COMMENT 'references users.id to identify the lab',
  `procedure_code`      varchar(31)  NOT NULL DEFAULT ''  COMMENT 'references procedure_type.procedure_code to identify this order type',
  `question_code`       varchar(31)  NOT NULL DEFAULT ''  COMMENT 'code identifying this question',
  `seq`                 int(11)      NOT NULL default 0   COMMENT 'sequence number for ordering',
  `question_text`       varchar(255) NOT NULL DEFAULT ''  COMMENT 'descriptive text for question_code',
  `required`            tinyint(1)   NOT NULL DEFAULT 0   COMMENT '1 = required, 0 = not',
  `maxsize`             int          NOT NULL DEFAULT 0   COMMENT 'maximum length if text input field',
  `fldtype`             char(1)      NOT NULL DEFAULT 'T' COMMENT 'Text, Number, Select, Multiselect, Date, Gestational-age',
  `options`             text         NOT NULL DEFAULT ''  COMMENT 'choices for fldtype S and T',
  `activity`            tinyint(1)   NOT NULL DEFAULT 1   COMMENT '1 = active, 0 = inactive',
  PRIMARY KEY (`lab_id`, `procedure_code`, `question_code`)
) ENGINE=MyISAM;
#EndIf

#IfMissingColumn procedure_type activity
ALTER TABLE `procedure_type` ADD COLUMN `activity` tinyint(1) NOT NULL default 1;
#EndIf

#IfMissingColumn procedure_type notes
ALTER TABLE `procedure_type` ADD COLUMN `notes` varchar(255) NOT NULL default '';
#EndIf

#IfNotTable procedure_answers
CREATE TABLE `procedure_answers` (
  `procedure_order_id`  bigint(20)   NOT NULL DEFAULT 0  COMMENT 'references procedure_order.procedure_order_id',
  `procedure_order_seq` int(11)      NOT NULL DEFAULT 1  COMMENT 'references procedure_order_code.seq',
  `question_code`       varchar(31)  NOT NULL DEFAULT '' COMMENT 'references procedure_questions.question_code',
  `answer_seq`          int(11)      NOT NULL AUTO_INCREMENT COMMENT 'supports multiple-choice questions',
  `answer`              varchar(255) NOT NULL DEFAULT '' COMMENT 'answer data',
  PRIMARY KEY (`procedure_order_id`, `procedure_order_seq`, `question_code`, `answer_seq`)
) ENGINE=MyISAM;
#EndIf

#IfNotTable procedure_providers
CREATE TABLE `procedure_providers` (
  `ppid`         bigint(20)   NOT NULL auto_increment,
  `name`         varchar(255) NOT NULL DEFAULT '',
  `npi`          varchar(15)  NOT NULL DEFAULT '',
  `protocol`     varchar(15)  NOT NULL DEFAULT 'DL',
  `login`        varchar(255) NOT NULL DEFAULT '',
  `password`     varchar(255) NOT NULL DEFAULT '',
  `orders_path`  varchar(255) NOT NULL DEFAULT '',
  `results_path` varchar(255) NOT NULL DEFAULT '',
  `notes`        text         NOT NULL DEFAULT '',
  PRIMARY KEY (`ppid`)
) ENGINE=MyISAM;
#EndIf

#IfNotTable procedure_order_code
CREATE TABLE `procedure_order_code` (
  `procedure_order_id`  bigint(20)  NOT NULL,
  `procedure_order_seq` int(11)     NOT NULL AUTO_INCREMENT COMMENT 'supports multiple tests per order',
  `procedure_type_id`   bigint(20)  NOT NULL                COMMENT 'references procedure_type.procedure_type_id',
  `procedure_code`      varchar(31) NOT NULL DEFAULT ''     COMMENT 'copy of procedure_type.procedure_code',
  PRIMARY KEY (`procedure_order_id`, `procedure_order_seq`)
) ENGINE=MyISAM;
INSERT INTO procedure_order_code
  SELECT po.procedure_order_id, 1, po.procedure_type_id, pt.procedure_code
  FROM procedure_order AS po
  LEFT JOIN procedure_type AS pt ON pt.procedure_type_id = po.procedure_type_id;
ALTER TABLE `procedure_order`
  DROP COLUMN `procedure_type_id`;
#EndIf

#IfMissingColumn procedure_order lab_id
ALTER TABLE `procedure_order`
  ADD COLUMN `lab_id`            bigint(20)   NOT NULL DEFAULT 0  COMMENT 'references procedure_providers.ppid',
  ADD COLUMN `specimen_type`     varchar(31)  NOT NULL DEFAULT '' COMMENT 'from the Specimen_Type list',
  ADD COLUMN `specimen_location` varchar(31)  NOT NULL DEFAULT '' COMMENT 'from the Specimen_Location list',
  ADD COLUMN `specimen_volume`   varchar(30)  NOT NULL DEFAULT '' COMMENT 'from a text input field';
UPDATE procedure_order AS po, procedure_order_code AS pc, procedure_type AS pt
  SET po.lab_id = pt.lab_id WHERE
  po.lab_id = 0 AND
  pc.procedure_order_id = po.procedure_order_id AND
  pt.procedure_type_id = pc.procedure_type_id AND
  pt.lab_id != 0;
#EndIf

#IfMissingColumn procedure_report procedure_order_seq
ALTER TABLE procedure_report
  ADD COLUMN `procedure_order_seq` int(11) NOT NULL DEFAULT 1 COMMENT 'references procedure_order_code.procedure_order_seq';
#EndIf

#IfMissingColumn procedure_order diagnoses
ALTER TABLE `procedure_order`
  ADD COLUMN `diagnoses` text NOT NULL DEFAULT '' COMMENT 'diagnoses and maybe other coding (e.g. ICD9:111.11)';
#EndIf

#IfMissingColumn procedure_providers remote_host
ALTER TABLE `procedure_providers`
  ADD COLUMN `remote_host` varchar(255)  NOT NULL DEFAULT ''  COMMENT 'IP or hostname of remote server',
  ADD COLUMN `send_app_id` varchar(255)  NOT NULL DEFAULT ''  COMMENT 'Sending application ID (MSH-3.1)',
  ADD COLUMN `send_fac_id` varchar(255)  NOT NULL DEFAULT ''  COMMENT 'Sending facility ID (MSH-4.1)',
  ADD COLUMN `recv_app_id` varchar(255)  NOT NULL DEFAULT ''  COMMENT 'Receiving application ID (MSH-5.1)',
  ADD COLUMN `recv_fac_id` varchar(255)  NOT NULL DEFAULT ''  COMMENT 'Receiving facility ID (MSH-6.1)',
  ADD COLUMN `DorP`        char(1)       NOT NULL DEFAULT 'D' COMMENT 'Debugging or Production (MSH-11)';
#EndIf

#IfMissingColumn procedure_order_code procedure_source
ALTER TABLE `procedure_order_code`
  ADD COLUMN `procedure_source` char(1) NOT NULL DEFAULT '1' COMMENT '1=original order, 2=added after order sent';
#EndIf

#IfMissingColumn procedure_result result_code
ALTER TABLE `procedure_result`
  ADD COLUMN `result_data_type` char(1) NOT NULL DEFAULT 'S' COMMENT
  'N=Numeric, S=String, F=Formatted, E=External, L=Long text as first line of comments',
  ADD COLUMN `result_code` varchar(31) NOT NULL DEFAULT '' COMMENT
  'LOINC code, might match a procedure_type.procedure_code',
  ADD COLUMN `result_text` varchar(255) NOT NULL DEFAULT '' COMMENT
  'Description of result_code';
# This severs the link between procedure_result and procedure_type:
UPDATE procedure_result AS ps, procedure_type AS pt
  SET ps.result_code = pt.procedure_code, ps.result_text = pt.description
  WHERE pt.procedure_type_id = ps.procedure_type_id;
ALTER TABLE `procedure_result` DROP COLUMN procedure_type_id;
#EndIf

#IfMissingColumn procedure_questions tips
ALTER TABLE `procedure_questions`
  ADD COLUMN `tips` varchar(255) NOT NULL DEFAULT '' COMMENT 'Additional instructions for answering the question';
#EndIf

#IfMissingColumn procedure_order_code procedure_name
ALTER TABLE `procedure_order_code`
  ADD COLUMN `procedure_name` varchar(255) NOT NULL DEFAULT '' COMMENT
  'Descriptive name of procedure_code';
# This severs the link between procedure_order_code and procedure_type:
UPDATE procedure_order_code AS pc, procedure_order AS po, procedure_type AS pt
  SET pc.procedure_name = pt.name
  WHERE po.procedure_order_id = pc.procedure_order_id AND
  pt.lab_id = po.lab_id AND
  pt.procedure_code = pc.procedure_code;
ALTER TABLE `procedure_order_code` DROP COLUMN procedure_type_id;
#EndIf

#IfMissingColumn procedure_report report_notes
ALTER TABLE procedure_report
  ADD COLUMN `report_notes` text NOT NULL DEFAULT '' COMMENT 'Notes from the lab';
#EndIf

#IfNotRow code_types ct_key SNOMED-PR
DROP TABLE IF EXISTS `temp_table_one`;
CREATE TABLE `temp_table_one` (
  `id` int(11) NOT NULL DEFAULT '0',
  `seq` int(11) NOT NULL DEFAULT '0'
) ENGINE=MyISAM ;
INSERT INTO `temp_table_one` (`id`, `seq`) VALUES ( IF( ((SELECT MAX(`ct_id`) FROM `code_types`)>=100), ((SELECT MAX(`ct_id`) FROM `code_types`) + 1), 100 ) , IF( ((SELECT MAX(`ct_seq`) FROM `code_types`)>=100), ((SELECT MAX(`ct_seq`) FROM `code_types`) + 1), 100 )  );
INSERT INTO code_types (ct_key, ct_id, ct_seq, ct_mod, ct_just, ct_fee, ct_rel, ct_nofs, ct_diag, ct_active, ct_label, ct_external, ct_claim, ct_proc, ct_term ) VALUES ('SNOMED-PR' , (SELECT MAX(`id`) FROM `temp_table_one`), (SELECT MAX(`seq`) FROM `temp_table_one`), 0, 'SNOMED', 1, 0, 0, 0, 0, 'SNOMED Procedure', 9, 1, 1, 0);
DROP TABLE `temp_table_one`;
#EndIf

#IfNotTable background_services 
CREATE TABLE IF NOT EXISTS `background_services` (
  `name` varchar(31) NOT NULL,
  `title` varchar(127) NOT NULL COMMENT 'name for reports',
  `active` tinyint(1) NOT NULL default '0',
  `running` tinyint(1) NOT NULL default '-1',
  `next_run` timestamp NOT NULL default CURRENT_TIMESTAMP,
  `execute_interval` int(11) NOT NULL default '0' COMMENT 'minimum number of minutes between function calls,0=manual mode',
  `function` varchar(127) NOT NULL COMMENT 'name of background service function',
  `require_once` varchar(255) default NULL COMMENT 'include file (if necessary)',
  `sort_order` int(11) NOT NULL default '100' COMMENT 'lower numbers will be run first',
  PRIMARY KEY  (`name`)
) ENGINE=MyISAM;
#EndIf

#IfNotRow background_services name phimail
INSERT INTO `background_services` (`name`, `title`, `execute_interval`, `function`, `require_once`, `sort_order`) VALUES
('phimail', 'phiMail Direct Messaging Service', 5, 'phimail_check', '/library/direct_message_check.inc', 100);
#EndIf

#IfNotRow users username phimail-service
INSERT INTO `users` (username,password,lname,authorized,active) 
  VALUES ('phimail-service','NoLogin','phiMail Gateway',0,0);
#EndIf

#IfNotRow users username portal-user
INSERT INTO `users` (username,password,lname,authorized,active) 
  VALUES ('portal-user','NoLogin','Patient Portal User',0,0);
#EndIf

#IfNotTable direct_message_log
CREATE TABLE IF NOT EXISTS `direct_message_log` (
  `id` bigint(20) NOT NULL auto_increment,
  `msg_type` char(1) NOT NULL COMMENT 'S=sent,R=received',
  `msg_id` varchar(127) NOT NULL,
  `sender` varchar(255) NOT NULL,
  `recipient` varchar(255) NOT NULL,
  `create_ts` timestamp NOT NULL default CURRENT_TIMESTAMP,
  `status` char(1) NOT NULL COMMENT 'Q=queued,D=dispatched,R=received,F=failed',
  `status_info` varchar(511) default NULL,
  `status_ts` timestamp NULL default NULL,
  `patient_id` bigint(20) default NULL,
  `user_id` bigint(20) default NULL,
  PRIMARY KEY  (`id`),
  KEY `msg_id` (`msg_id`),
  KEY `patient_id` (`patient_id`)
) ENGINE=MyISAM;
#EndIf

#IfMissingColumn procedure_order_code diagnoses
ALTER TABLE `procedure_order_code`
  ADD COLUMN `diagnoses` text NOT NULL DEFAULT '' COMMENT
  'diagnoses and maybe other coding (e.g. ICD9:111.11)';
UPDATE procedure_order_code AS pc, procedure_order AS po
  SET pc.diagnoses = po.diagnoses
  WHERE po.procedure_order_id = pc.procedure_order_id;
#EndIf

# At this point this obsolete column will always exist, because it was created
# and then moved to another table during this release cycle.
ALTER TABLE `procedure_order` DROP COLUMN diagnoses;

#IfMissingColumn lists modifydate
ALTER TABLE `lists` ADD COLUMN `modifydate` timestamp NOT NULL default CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP;
#EndIf

#IfMissingColumn code_types ct_problem
ALTER TABLE `code_types` ADD COLUMN `ct_problem` tinyint(1) NOT NULL DEFAULT '0' COMMENT '1 if this code type is used as a medical problem';
UPDATE code_types SET ct_problem = 1 WHERE ct_key='ICD9';
UPDATE code_types SET ct_problem = 1 WHERE ct_key='DSMIV';
UPDATE code_types SET ct_problem = 1 WHERE ct_key='ICD10';
UPDATE code_types SET ct_problem = 1 WHERE ct_key='SNOMED';
#EndIf

#IfMissingColumn procedure_order date_transmitted
ALTER TABLE `procedure_order`
  ADD COLUMN `date_transmitted` datetime DEFAULT NULL COMMENT
  'time of order transmission, null if unsent';
UPDATE procedure_order SET date_transmitted = date_ordered WHERE
  date_transmitted IS NULL AND date_ordered IS NOT NULL;
#EndIf

#IfNotRow2D list_options list_id lists option_id issue_types
INSERT INTO list_options (`list_id`,`option_id`,`title`) VALUES ('lists','issue_types','Issue Types');
#EndIf

#IfNotMigrateClickOptions
#EndIf

#IfNotTable issue_types
CREATE TABLE `issue_types` (
  `category` varchar(75) NOT NULL DEFAULT '',
  `type` varchar(75) NOT NULL DEFAULT '',
  `plural` varchar(75) NOT NULL DEFAULT '',
  `singular` varchar(75) NOT NULL DEFAULT '',
  `abbreviation` varchar(75) NOT NULL DEFAULT '',
  `style` smallint(6) NOT NULL DEFAULT '0',
  `force_show` smallint(6) NOT NULL DEFAULT '0',
  `ordering` int(11) NOT NULL DEFAULT '0',
  PRIMARY KEY (`category`,`type`)
) ENGINE=MyISAM;
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('10','default','medical_problem','Medical Problems','Problem','P','0','1');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('30','default','medication','Medications','Medication','M','0','1');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('20','default','allergy','Allergies','Allergy','A','0','1');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('40','default','surgery','Surgeries','Surgery','S','0','0');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('50','default','dental','Dental Issues','Dental','D','0','0');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('10','athletic_team','football_injury','Football Injuries','Injury','I','2','1');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('20','athletic_team','medical_problem','Medical Problems','Medical','P','0','0');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('30','athletic_team','allergy','Allergies','Allergy','A','1','0');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('40','athletic_team','general','General','General','G','1','0');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('10','ippf_specific','medical_problem','Medical Problems','Problem','P','0','1');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('30','ippf_specific','medication','Medications','Medication','M','0','1');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('20','ippf_specific','allergy','Allergies','Allergy','Y','0','1');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('40','ippf_specific','surgery','Surgeries','Surgery','S','0','0');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('50','ippf_specific','ippf_gcac','Abortions','Abortion','A','3','0');
INSERT INTO issue_types(`ordering`,`category`,`type`,`plural`,`singular`,`abbreviation`,`style`,`force_show`) VALUES ('60','ippf_specific','contraceptive','Contraception','Contraception','C','4','0');
#EndIf

#IfMissingColumn issue_types active
ALTER TABLE `issue_types` ADD COLUMN `active` tinyint(1) NOT NULL DEFAULT '1';
#EndIf

#IfNotColumnType immunizations administered_date datetime
ALTER TABLE `immunizations`
  MODIFY COLUMN administered_date datetime DEFAULT NULL;
#EndIf

#IfMissingColumn immunizations amount_administered
ALTER TABLE `immunizations`
  ADD COLUMN `amount_administered` int(11) DEFAULT NULL;
#EndIf

#IfMissingColumn immunizations amount_administered_unit
ALTER TABLE `immunizations`
  ADD COLUMN `amount_administered_unit` varchar(50) DEFAULT NULL;
#EndIf

#IfMissingColumn immunizations expiration_date
ALTER TABLE `immunizations`
  ADD COLUMN `expiration_date` date DEFAULT NULL;
#EndIf

#IfMissingColumn immunizations route
ALTER TABLE `immunizations`
  ADD COLUMN `route` varchar(100) DEFAULT NULL;
#EndIf

#IfMissingColumn immunizations administration_site
ALTER TABLE `immunizations`
  ADD COLUMN `administration_site` varchar(100) DEFAULT NULL;
#EndIf

#IfMissingColumn immunizations added_erroneously
ALTER TABLE `immunizations`
  ADD COLUMN `added_erroneously` tinyint(1) NOT NULL DEFAULT '0';
#EndIf

#IfMissingColumn documents path_depth
ALTER TABLE `documents` ADD COLUMN `path_depth` TINYINT DEFAULT '1' COMMENT 'Depth of path to use in url to find document. Not applicable for CouchDB.';
#Endif

#IfNotTable users_secure
CREATE TABLE `users_secure` (
  `id` bigint(20) NOT NULL,
  `username` varchar(255) DEFAULT NULL,
  `password` varchar(255),
  `salt` varchar(255),
  `last_update` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
  `password_history1` varchar(255),
  `salt_history1` varchar(255),
  `password_history2` varchar(255),
  `salt_history2` varchar(255),
  PRIMARY KEY (`id`),
  UNIQUE KEY `USERNAME_ID` (`id`,`username`)
) ENGINE=InnoDb; 
#EndIf

#IfMissingColumn patient_access_onsite portal_salt
ALTER TABLE `patient_access_onsite` ADD COLUMN `portal_salt` VARCHAR(100) NULL;
#Endif

#IfMissingColumn procedure_order clinical_hx
ALTER TABLE `procedure_order`
  ADD COLUMN `clinical_hx` varchar(255) DEFAULT '' COMMENT
  'clinical history text that may be relevant to the order';
#EndIf

#IfMissingColumn procedure_order_code do_not_send
ALTER TABLE `procedure_order_code`
  ADD COLUMN `do_not_send` tinyint(1) NOT NULL DEFAULT '0' COMMENT '0 = normal, 1 = do not transmit to lab';
#EndIf

#IfNotTable misc_address_book
CREATE TABLE `misc_address_book` (
  `id` bigint(20) NOT NULL AUTO_INCREMENT,
  `fname` varchar(255) DEFAULT NULL,
  `mname` varchar(255) DEFAULT NULL,
  `lname` varchar(255) DEFAULT NULL,
  `street` varchar(60) DEFAULT NULL,
  `city` varchar(30) DEFAULT NULL,
  `state` varchar(30) DEFAULT NULL,
  `zip` varchar(20) DEFAULT NULL,
  `phone` varchar(30) DEFAULT NULL,
  PRIMARY KEY (`id`)
) ENGINE=InnoDB;
#EndIf

#IfMissingColumn documents imported
ALTER TABLE `documents` ADD COLUMN `imported` TINYINT DEFAULT 0 NULL COMMENT 'Parsing status for CCR/CCD/CCDA importing';
#EndIf