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Failed to load data #6

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Jwenyi opened this issue Dec 25, 2021 · 4 comments
Open

Failed to load data #6

Jwenyi opened this issue Dec 25, 2021 · 4 comments
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enhancement New feature or request

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@Jwenyi
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Jwenyi commented Dec 25, 2021

Hi DataCanvas team,

I'm a surgeon and I'm now trying to use Cooka for my research. However, I have failed to load data when I using "import " function. Copy file is successful, but the load data is stucked. And I noticed that the Terminal kept repeating the same message. I attached the Figs of these errors, and the detailed infos of my platforms.
Any help you could provide is sincerely appreciated.

All the best,
Wenyi Jin

image
image

Detailed infos about this error:
Window 10
python: v3.7
GPU: NVIDA 3060
Chrome: v93.0.4577.82, 64 bit
File: a csv file which's sep is ","
File path: D:/BioI/step2_uniLogitExp.csv

@oaksharks
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oaksharks commented Dec 27, 2021

Thanks for your feedback @Jwenyi. It seems that the path on windows os cannot be recognized correctly .
Try to update cooka with the command and restart your server then upload file again:
pip install cooka==0.1.3

pip install cooka==0.1.5  # 0.1.5 is the latest version

This is the requirments version I installed for your reference:

Cooka/Dockerfile

Lines 37 to 42 in f5aa31a

RUN pip3 install -v numpy==1.19.1 scikit-learn==0.23.1 tensorflow==2.2.0 # Prepare for shap
RUN pip3 install -v shap==0.28.5 matplotlib dask-ml==1.4.0 # Prepare for hypergbm
RUN pip3 install -v cooka # install cooka
RUN pip3 install -v scikit-learn==0.23.1 featuretools==0.27.1 dask-ml==1.4.0

@oaksharks oaksharks self-assigned this Dec 27, 2021
@oaksharks oaksharks added bug Something isn't working enhancement New feature or request and removed bug Something isn't working labels Dec 27, 2021
@Jwenyi
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Jwenyi commented Dec 28, 2021

It works! Thanks.

@Jwenyi
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Jwenyi commented Dec 28, 2021

Hi Dr.Wu,

I got another issue when I trying to install jupyterlab for exporting the notebook of my results.
Jupyter-lab and Jupyter-serve only supports tornado>=6.1, but Cooka needs tornado==6.0.4. And I tried the oldest version of jupyterlab, which still needs tornado>=6.1.
So, I found a temporary way to figure it out. I use jupyter notebook==5.7.5 instead of jupyterlab. Although it works, it is obviously not the best way out. So, it is any possibile for you to update Cooka for this issue?

All the best,
Wenyi Jin

@oaksharks
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Hi Wenyi ,

Have you tried installing jupyterab after installing cooka? tornado will be upgraded to 6.1 and it still working with cooka.

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