This folder contains all the data and code used in the manuscript entitled "Transcriptomic clustering of critically ill COVID-19 patients" (https://www.medrxiv.org/content/10.1101/2022.03.01.22271576v1):
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"covid_clustering.R": R code. This file uploads all the following data files, that must be in the same directory.
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"transcript_data.Rdata": Transcriptomic data. FastQ files available at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197204.
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"miRNA_counts.csv": miRNA raw counts. FastQ files available at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197258.
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"molecules_downnetwork.txt": Results from Ingenuity Pathway Analysys.
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"molecules_upnetwork.txt": Results from Ingenuity Pathway Analysys.
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"clinical_data_github.csv": Anonymized clinical data.
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Cecilia López-Martínez ([email protected]), Guillermo M Albaiceta ([email protected]), Laura Amado-Rodríguez ([email protected]).