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No CellPhoneDB interacions found in this input. #45
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Hi @ankurnaqib 82k cells divided into 6 sample groups...Do you mean 6 different phenotypes or 6 cell populations? Best |
Is there because of the species? not human, so the gene intersect is zero? |
i solved this problem. Because my dataset was not normalized dataset. recommended check your dataset. |
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Hi. I was running the following command:
cellphonedb method statistical_analysis cellphonedb_meta.txt cellphonedb_countv2.txt --threads 30 --counts-data hgnc_symbol
and I was getting the "No CellPhoneDB interacions found in this input." error.
My data has around 82k cells divided into 6 sample groups, so I followed the suggestions on page Teichlab/cellphonedb#309 and modified my command to :
cellphonedb method statistical_analysis cellphonedb_meta.txt cellphonedb_countv2.txt --threads 30 --counts-data hgnc_symbol --subsampling --subsampling-log False --subsampling-n
um-cells 50 --iterations=10
but I am getting the same error. My data has HGNC gene symbols. Any help would be appreciated. Thank you.
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