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dA/dLambda outputs: trajectory file and dispersion #678

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EzryStIago opened this issue Mar 21, 2024 · 1 comment
Open

dA/dLambda outputs: trajectory file and dispersion #678

EzryStIago opened this issue Mar 21, 2024 · 1 comment
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@EzryStIago
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When estimating a restraint free energy by changing the force constant (section 6.5.3 in the user guide), dA/dLambda is accumulated and printed in the log file (without any measures of dispersion).

It would be nice to have:

  1. the raw dA/dLambda samples (with some user-specified frequency)
  2. a standard deviation (or variance) for the accumulated dA/dLambda

This would streamline my RFEP calculations (and simplify the SAFEP tutorial as well).

@jhenin jhenin self-assigned this Mar 22, 2024
@jhenin
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jhenin commented Mar 22, 2024

Thank you for the good suggestion. I think the best implementation will be for the bias to output dV/dlambda to the colvars.traj file.

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