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Error building develop version: lzma.h not found #99

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mpaya opened this issue Oct 26, 2016 · 0 comments
Open

Error building develop version: lzma.h not found #99

mpaya opened this issue Oct 26, 2016 · 0 comments

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@mpaya
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mpaya commented Oct 26, 2016

After cloning the develop branch and following the initial installation steps, cmake worked with no errors but make didn't. I'm working on a remote server.

cmake .. -DCMAKE_CXX_COMPILER=/data/apps/gcc/4.9.3/bin/c++ -DCMAKE_C_COMPILER=/data/apps/gcc/4.9.3/bin/gcc
make
...
make[5]: Entering directory `/lustre/projects/staton/software/salmon/external/staden-io_lib/io_lib'
/bin/sh ../libtool  --tag=CC   --mode=compile /data/apps/gcc/4.9.3/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I..     -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c -o libstaden_read_la-cram_io.lo `test -f 'cram_io.c' || echo './'`cram_io.c
libtool: compile:  /data/apps/gcc/4.9.3/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I.. -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c cram_io.c -o libstaden_read_la-cram_io.o
cram_io.c:66:18: fatal error: lzma.h: No such file or directory
 #include <lzma.h>
                  ^
compilation terminated.
make[5]: *** [libstaden_read_la-cram_io.lo] Error 1
make[5]: Leaving directory `/lustre/projects/staton/software/salmon/external/staden-io_lib/io_lib'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/lustre/projects/staton/software/salmon/external/staden-io_lib'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/lustre/projects/staton/software/salmon/external/staden-io_lib'
make[2]: *** [libstadenio-prefix/src/libstadenio-stamp/libstadenio-build] Error 2
make[2]: Leaving directory `/lustre/projects/staton/software/salmon/build'
make[1]: *** [CMakeFiles/libstadenio.dir/all] Error 2
make[1]: Leaving directory `/lustre/projects/staton/software/salmon/build'
make: *** [all] Error 2

make.log.txt

From the salmon directory, I find lzma.h in two locations:
./external/xz-5.2.2/src/liblzma/api/lzma.h
./external/install/include/lzma.h

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