Read matrix from Alevin

[knokknok]

Hello,
Is there a way to generate the read matrix from alevin (before collapsing the UMIs)?
I'd like to plot the nUMIs vs nReads for each gene of each cell.
Thanks!

[rob-p]

Hi @knokknok,

You can directly use alevinQC to get such plots.

Best,
Rob

[knokknok]

Aren't those aggregated at the cell level?
I would like the information for each gene of each cell.

[rob-p]

Hi @knokknok,

That's a good point. I don't know if there's a way to get at this easily. I'll ping @k3yavi here for his input.

--Rob

[rob-p]

Pinging @k3yavi here again and moving this over to a discussion where convo might better take place. This now lives here.