You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I've encountered issue with using hg19 pre-computed indices - with both salmon_sa_index and salmon_partial_sa_index. There is a [rapidjson internal assertion failure: IsObject()] message error. Quantification works well with hg19 index built on my machine. I'm running Ubuntu 20.04 LTS on a machine with Windows.
I would really appreciate some information. Especially if refgenie indices are deprecated. Thanks!
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
I've encountered issue with using hg19 pre-computed indices - with both salmon_sa_index and salmon_partial_sa_index. There is a [rapidjson internal assertion failure: IsObject()] message error. Quantification works well with hg19 index built on my machine. I'm running Ubuntu 20.04 LTS on a machine with Windows.
I would really appreciate some information. Especially if refgenie indices are deprecated. Thanks!
Beta Was this translation helpful? Give feedback.
All reactions