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Commits on Oct 24, 2024

• updating README

  canfirtina

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Commits on Oct 16, 2024

• rawsamble info in README

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Commits on Oct 8, 2024

• Experimental options

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Commits on Sep 10, 2024

• README update

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• Rawsamble new preset parameters

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Commits on Sep 9, 2024

• Update README.md

  canfirtina

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• Update README.md

  canfirtina

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Commits on Jul 29, 2024

• Fixing bugs: IO thread can now be equal to overall number of threads and Profiling File IO provides the correct numbers now

  canfirtina

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Commits on Jul 14, 2024

• Multi-batching fix for SLOW5

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Commits on Jul 6, 2024

• Multithreaded IO and batched reading for SLOW5

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Commits on May 7, 2024

• README fix for Rawsamble

  canfirtina

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• Rawsamble: overlapping signals and some fixes in RawHash2

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Commits on Apr 8, 2024

• Update README.md

  canfirtina

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Commits on Apr 3, 2024

• Switching to the newest version of POD5

  canfirtina

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• Minor bug fixes. Last position could be set to -1 (as uint), fixed it.

  canfirtina

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Commits on Mar 19, 2024

• Fixing the make issue related to disabling FAST5

  canfirtina

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• New quantization, some fixes in evaluation scripts

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Commits on Nov 28, 2023

• DTW integration and few other new features, bug fixes. See the recent changes list in the main README

  canfirtina

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Commits on Sep 20, 2023

• Optimized parameters for RawHash2 and newer features

  canfirtina

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Commits on Sep 13, 2023

• Fixes in scripts

  canfirtina

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Commits on Sep 11, 2023

• A minor fix in Makefile

  canfirtina

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• Adding the reproducibility scripts for RawHash2 and some more optimizations in default parameters

  canfirtina

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Commits on Aug 28, 2023

• Fully switching to weight-based mapping decision. Some fixes in scripts

  canfirtina

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Commits on Aug 25, 2023

• Optimized parameters and new experiments for weighted decisions

  canfirtina

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Commits on Aug 23, 2023

• Minor changes in default options. Can be sub-optimal for human

  canfirtina

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Commits on Aug 18, 2023

• README and help message update

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Commits on Aug 17, 2023

• RawHash2: New chaining algorithm, seed filtering, more flexibility

  canfirtina

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Commits on Jul 4, 2023

• Test README fixes

  canfirtina

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Commits on Jun 22, 2023

• Adding the SLOW5 support

  canfirtina

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Commits on Jun 17, 2023

• Fixing SLOW5 name clash

  canfirtina

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Commits on Jun 11, 2023

• Updating README

  canfirtina

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• Decoupling HDF5/POD5/SLOW5 compilations

  canfirtina

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• R10 k-mer models can be parsed now as well.

  canfirtina

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Commits on May 22, 2023

• Adding the missing symbolic links

  canfirtina

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Commits on May 5, 2023

• Fixing the outdated link for d3_yeast_r94

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