Commits

Commits on May 7, 2024

README fix for Rawsamble
canfirtina
committedMay 7, 2024
Rawsamble: overlapping signals and some fixes in RawHash2
canfirtina
committedMay 7, 2024

Commits on Apr 8, 2024

Update README.md
canfirtina
committedApr 8, 2024

Commits on Apr 3, 2024

Switching to the newest version of POD5
canfirtina
committedApr 3, 2024
Minor bug fixes. Last position could be set to -1 (as uint), fixed it.
canfirtina
committedApr 3, 2024

Commits on Mar 19, 2024

Fixing the make issue related to disabling FAST5
canfirtina
committedMar 19, 2024
New quantization, some fixes in evaluation scripts
canfirtina
committedMar 19, 2024

Commits on Nov 28, 2023

DTW integration and few other new features, bug fixes. See the recent changes list in the main README
canfirtina
committedNov 28, 2023

Commits on Sep 20, 2023

Optimized parameters for RawHash2 and newer features
canfirtina
committedSep 20, 2023

Commits on Sep 13, 2023

Fixes in scripts
canfirtina
committedSep 13, 2023

Commits on Sep 11, 2023

A minor fix in Makefile
canfirtina
committedSep 11, 2023
Adding the reproducibility scripts for RawHash2 and some more optimizations in default parameters
canfirtina
committedSep 11, 2023

Commits on Aug 28, 2023

Fully switching to weight-based mapping decision. Some fixes in scripts
canfirtina
committedAug 28, 2023

Commits on Aug 25, 2023

Optimized parameters and new experiments for weighted decisions
canfirtina
committedAug 25, 2023

Commits on Aug 23, 2023

Minor changes in default options. Can be sub-optimal for human
canfirtina
committedAug 23, 2023

Commits on Aug 18, 2023

README and help message update
canfirtina
committedAug 18, 2023

Commits on Aug 17, 2023

RawHash2: New chaining algorithm, seed filtering, more flexibility
canfirtina
committedAug 17, 2023

Commits on Jul 4, 2023

Test README fixes
canfirtina
committedJul 4, 2023

Commits on Jun 22, 2023

Adding the SLOW5 support
canfirtina
committedJun 22, 2023

Commits on Jun 17, 2023

Fixing SLOW5 name clash
canfirtina
committedJun 17, 2023

Commits on Jun 11, 2023

Updating README
canfirtina
committedJun 11, 2023
Decoupling HDF5/POD5/SLOW5 compilations
canfirtina
committedJun 11, 2023
R10 k-mer models can be parsed now as well.
canfirtina
committedJun 11, 2023

Commits on May 22, 2023

Adding the missing symbolic links
canfirtina
committedMay 22, 2023

Commits on May 5, 2023

Fixing the outdated link for d3_yeast_r94
canfirtina
committedMay 5, 2023

Commits on Apr 17, 2023

Linking pthread and std c++
canfirtina
committedApr 17, 2023

Commits on Mar 20, 2023

Profiling and sequencing figures
canfirtina
committedMar 20, 2023
Adding the profiling mode, and generating more evaluation metrics
canfirtina
committedMar 20, 2023

Commits on Mar 10, 2023

ZSTD sobmodule for POD5
canfirtina
committedMar 10, 2023
POD5 support
canfirtina
committedMar 10, 2023

Commits on Feb 28, 2023

Fixing scripts, options, and small bug fix in code
canfirtina
committedFeb 28, 2023

Commits on Jan 31, 2023

Moving to multiple headers than a single one to improve adaptability. Adding comments for readability. Now we have both C and C++ files
canfirtina
committedJan 31, 2023

Commits on Jan 29, 2023

Improving the scripts for reproducibility
canfirtina
committedJan 29, 2023

Commits on Jan 23, 2023

Adding the submodules
canfirtina
committedJan 23, 2023
Update README.md
canfirtina
committedJan 23, 2023