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main.nf
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main.nf
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#!/usr/bin/env nextflow
/*
========================================================================================
nf-core/bpertussisciwgs
========================================================================================
Github : https://github.com/cdcgov/bpertussis-ciwgs
Website: https://github.com/cdcgov/bpertussis-ciwgs
----------------------------------------------------------------------------------------
*/
nextflow.enable.dsl = 2
/*
========================================================================================
GENOME PARAMETER VALUES
========================================================================================
*/
params.fasta = WorkflowMain.getGenomeAttribute(params, 'fasta')
/*
========================================================================================
VALIDATE & PRINT PARAMETER SUMMARY
========================================================================================
*/
WorkflowMain.initialise(workflow, params, log)
/*
========================================================================================
NAMED WORKFLOW FOR PIPELINE
========================================================================================
*/
include { BPERTUSSISCIWGS } from './workflows/bpertussisciwgs'
//
// WORKFLOW: Run main bpertussisciwgs analysis pipeline
//
workflow NFCORE_BPERTUSSISCIWGS {
BPERTUSSISCIWGS ()
}
/*
========================================================================================
RUN ALL WORKFLOWS
========================================================================================
*/
//
// WORKFLOW: Execute a single named workflow for the pipeline
//
//
workflow {
NFCORE_BPERTUSSISCIWGS ()
}
/*
========================================================================================
THE END
========================================================================================
*/