- Option to NOT adding all search taxa (
--notAddingTaxa); OFF by default, i.e. all search taxa will be present in phyloprofile output - Check invalid min-/max rank for referece species (specified by --minDist and --maxDist).
If the specified ranks (by default,
--minDist genus--maxDist kingdom) are not available, the next valid ranks will be suggested (or automatically applied if default ranks are used) - Check if seed sequence cannot be retrieved by blast. Return with the blast command
- Fixed issue with long directory path for FASTA36 v36.3.8g Dec 2017
- Option to not check annotations for fdog.checkData (option
--ignoreAnno) - Check compatibility between blastp and blast DBs
- Work with MUSCLE v5.1
- Replace MuscleCommandline and MafftCommandline by subprocess.run