Commits

Commits on Apr 29, 2021

Merge pull request PMCC-BioinformaticsCore#95 from xinzhel97/unit-test-wgsgermline-workflow
junyk
committedApr 29, 2021

Commits on Apr 27, 2021

Add minimal tests to some tools
xinzhel97
committedApr 27, 2021

Commits on Apr 21, 2021

Remove unused code
xinzhel97
committedApr 21, 2021
Add generic test to some tools to check only if outputs exist
xinzhel97
committedApr 21, 2021

Commits on Apr 18, 2021

Merge remote-tracking branch 'upstream/master' into unit-test-wgsgermline-workflow
xinzhel97
committedApr 18, 2021
Merge pull request PMCC-BioinformaticsCore#97 from PMCC-BioinformaticsCore/include-test-data-subdirectories
junyk
committedApr 18, 2021
Include test data in subdirectories
junyk
committedApr 18, 2021

Commits on Apr 16, 2021

Merge pull request PMCC-BioinformaticsCore#96 from jiaan-yu/gridss-2.10
rlupat
committedApr 16, 2021
Change GridssLatest to 2.10.2
jiaan-yu
committedApr 16, 2021

Commits on Apr 13, 2021

Remove unused code
xinzhel97
committedApr 13, 2021
Add necessary comments and remove unused code
xinzhel97
committedApr 13, 2021
Update test for Vcf data type and unit test for Gatk4HaplotypeCaller
xinzhel97
committedApr 13, 2021
Update test for FastqGzPair data type and unit test for fastqc
xinzhel97
committedApr 13, 2021
Make variable name more understandable
xinzhel97
committedApr 13, 2021

Commits on Apr 12, 2021

Delete unused functions
xinzhel97
committedApr 12, 2021
Fix base command
jiaan-yu
committedApr 12, 2021
Add unit tests for 29 tools
xinzhel97
committedApr 12, 2021
Add test data for WGSGermline
xinzhel97
committedApr 12, 2021
Update tests for bam and vcf data types
xinzhel97
committedApr 12, 2021
Fix bug
jiaan-yu
committedApr 12, 2021
Revert gridss base 2.4 to master
jiaan-yu
committedApr 12, 2021
Remove duplicate inputs for gridss 2.10.2; and make option workingDir consistent
jiaan-yu
committedApr 12, 2021
Add gridss 2.10.2 container
jiaan-yu
committedApr 12, 2021
Add gridss 2.10.2 base
jiaan-yu
committedApr 12, 2021

Commits on Apr 7, 2021

Update unit test for bam
xinzhel97
committedApr 7, 2021

Commits on Apr 6, 2021

Add unit tests for 3 data types
xinzhel97
committedApr 6, 2021

Commits on Mar 14, 2021

wrap tests in a class method
xinzhel97
committedMar 14, 2021

Commits on Jan 29, 2021

Add type alias for some variantcallers
illusional
committedJan 29, 2021

Commits on Jan 12, 2021

Format files
illusional
committedJan 12, 2021
Fix bracket for test_tools_definitions.py
illusional
committedJan 12, 2021
Clarify error message for test_tools_definitions
illusional
committedJan 12, 2021

Commits on Dec 21, 2020