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  • Vall d'Hebron Institute of Oncology (VHIO)
  • Barcelona

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  • NeoPred-NF Public

    Nextflow implementation of Neoantigen prediction with HLA-typing grouping matched normal-tumor WGS/WES and tumor RNA-seq

    Nextflow 1 1 MIT License Updated Oct 7, 2023

  • pMTnet Public

    Forked from tianshilu/pMTnet

    Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

    Python GNU General Public License v2.0 Updated Jun 15, 2023

  • hla_pipeline Public

    Forked from jfnavarro/hla_pipeline

    DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions

    Python MIT License Updated Jun 15, 2023

  • toyplot Public

    Forked from sandialabs/toyplot

    Interactive plotting for Python.

    Jupyter Notebook Other Updated Jun 12, 2023

  • long_read_wgs Public

    Python MIT License Updated Jun 2, 2023

  • SVDB Public

    Forked from J35P312/SVDB

    structural variant database software

    Python MIT License Updated May 5, 2023

  • awesome-compbio-chatgpt Public

    Forked from csbl-br/awesome-compbio-chatgpt

    An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

    The Unlicense Updated Apr 8, 2023

  • rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow MIT License Updated Dec 19, 2022

  • cdot Public

    Forked from SACGF/cdot

    Transcript versions for HGVS libraries

    Python MIT License Updated May 20, 2022

  • modules Public

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow MIT License Updated Dec 3, 2021

  • getting-started-with-genomics-tools-and-resources Public

    Forked from crazyhottommy/getting-started-with-genomics-tools-and-resources

    Unix, R and python tools for genomics and data science

    Shell Updated Sep 8, 2021

  • scanpy Public

    Forked from scverse/scanpy

    Single-Cell Analysis in Python. Scales to >1M cells.

    Python BSD 3-Clause "New" or "Revised" License Updated May 5, 2021

  • biotools Public

    Forked from jdidion/biotools

    A list of useful bioinformatics resources

    Updated Apr 28, 2021

  • pure-sh-bible Public

    Forked from dylanaraps/pure-sh-bible

    📖 A collection of pure POSIX sh alternatives to external processes.

    Shell MIT License Updated Feb 15, 2021

  • atacseq Public

    Forked from nf-core/atacseq

    ATAC-seq peak-calling, QC and differential analysis pipeline

    Nextflow MIT License Updated Jan 26, 2021

  • Micropep Public

    Pipeline to identify putative micropeptides from alignment BAM files.

    Python MIT License Updated Nov 2, 2020

  • RNA-Seq-Analysis Public

    Jupyter Notebook Updated Sep 29, 2020

  • DiabPred Public

    Type 2 diabetes prediction based on genomic data with deep learning algorithms

    R MIT License Updated Jul 11, 2019

  • SLA Public

    Skin Lesion Analyser

    Jupyter Notebook MIT License Updated Jun 20, 2019