start extracting a cellranger-only configuration subset #2771
Workflow file for this run
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| name: Test enclone | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| env: | |
| RUST_VERSION: "1.74.0" | |
| CARGO_INCREMENTAL: 0 | |
| jobs: | |
| test-mac: | |
| # This job runs on MacOS Catalina | |
| runs-on: macos-latest | |
| steps: | |
| # check out master | |
| - name: Checkout enclone master | |
| uses: actions/checkout@master | |
| - uses: Swatinem/rust-cache@v2 | |
| with: | |
| key: ${{ matrix.style }}v1 # increment this to bust the cache if needed | |
| # set up caching (duplicated verbatim below) | |
| # | |
| # We have observed that Mac builds on GitHub Actions sometimes fail with errors about | |
| # crates, including prost. These errors are observed to come and go as unrelated commits | |
| # are made. We believe these errors are associated with caching. | |
| # | |
| # 1. We added a purge step, which worked for a while, then exhibited the same error | |
| # phenotype. Now turned off. | |
| # | |
| # 2. We turned off the caching. This seems to have solved the problem. | |
| # | |
| # THIS IS A NEW VERSION. MAYBE IT WILL WORK. | |
| - uses: Swatinem/rust-cache@v2 | |
| # start the real work | |
| - name: Remove the Cargo target directory | |
| if: github.ref == 'refs/heads/master' | |
| run: cargo clean | |
| - name: build-enclone | |
| run: cargo build | |
| - name: download test data | |
| run: git clone --depth=1 https://github.com/10XGenomics/enclone-data.git | |
| - name: unit tests | |
| run: cd enclone_exec; cargo test --features basic -- --nocapture | |
| test-linux: | |
| # This job runs on Linux | |
| runs-on: ubuntu-latest | |
| steps: | |
| # check out master | |
| - name: Checkout enclone master | |
| uses: actions/checkout@master | |
| with: | |
| fetch-depth: 100 | |
| # set up caching (duplicated verbatim below) | |
| - uses: Swatinem/rust-cache@v2 | |
| # start the real work | |
| - name: Check for large files | |
| run: > | |
| git rev-list --objects ${{github.event.pull_request.base.sha}}.. | |
| | git cat-file --batch-check='%(objectname) %(objecttype) %(objectsize) %(rest)' | |
| | awk '$2 == "blob" && $3 >= 4194304 { print substr($1, 1, 7), $3, $4; fail=1 } END { exit fail }' | |
| - name: Remove the Cargo target directory | |
| if: github.ref == 'refs/heads/master' | |
| run: cargo clean | |
| - name: Check Rust formatting | |
| run: cargo fmt -- --check | |
| - name: build-enclone | |
| run: cargo build | |
| - name: download test data | |
| run: git clone --depth=1 https://github.com/10XGenomics/enclone-data.git | |
| - name: unit tests | |
| run: cd enclone_exec; cargo test --features basic -- --nocapture |