A hybrid quantum mechanics/molecular mechanics (QM/MM) model and the quasiclassical trajectory (QCT) method have been combined to study the reaction of alkene methylation by methanol catalyzed by the zeolite H-MFI. The rate-limiting step of this reaction is the methylation of the alkene, and the apparent activation energy calculated at the ωB97X-D/6-31G(d,p)//ωB97X-D/6-311++G(3df,3pd) level of theory for this step agrees well with experiment and previous full QM studies. Following the ethene methylation transition state toward the products along the intrinsic reaction coordinate reveals the existence of a protonated cyclopropane (PCP+) carbocation intermediate. A similar protonated methylcyclopropane (mPCP+) carbocation intermediate is found for propene methylation. The intermediates produced during the alkene methylation reaction are metastable with a lifetime of O(1 ps) obtained from QCTs. Because of the short lifetime of these intermediates, the available energy in the carbocation is not in thermal equilibrium distribution with the zeolite lattice before subsequent reaction occurs. The qualitative difference between product distributions obtained by static and dynamic reaction pathways suggests the pathways of zeolite-catalyzed reactions proceed through high-temperature pathways that differ from the 0 K potential energy surface. The transformation of the m-PCP+ intermediate to the longer-lived secondary 2-butyl carbocation observed during QCTs suggests that more stable carbocations can properly thermalize and exist as reaction intermediates for longer than 1 ps.

Quantum mechanics/molecular mechanics (QM/MM) simulations provide an efficient avenue for studying reactions catalyzed in zeolite systems; however, the accuracy of such calculations is highly dependent on the zeolite MM parameters used. Previously reported parameters (P1), which were chosen to minimize the root mean square (RMS) deviations of adsorption energies compared with full QM ωB97X-D/6-31+G∗∗ adsorption energies, are shown to overestimate binding energies compared with experimental values, particularly for larger substrates. To address this issue, a new parameter set (P2) is derived by rescaling the previously reported characteristic energies of the Lennard-Jones potential in P1. The accuracy of the thermal correction for adsorption enthalpies determined by the rigid rotor-harmonic oscillator approximation (RRHO) is examined and shown to be improved by treating low-lying vibrational modes as free translational and rotational modes via a quasi-RRHO model. With P2 and quasi-RRHO, adsorption energies calculated with QM/MM agree with experimental values with an RMS error of 1.8 kcal/mol for both nonpolar and polar molecules adsorbed in MFI, H-MFI, and H-BEA. By contrast, the RMS error for the same test sets obtained using parameter set P1 is 8.3 kcal/mol. Glucose-fructose isomerization catalyzed by Sn-BEA is taken as an example to demonstrate that improved values for apparent activation energies can be obtained using the methodology reported here. With parameter set P2, the apparent activation energy calculated with QM/MM reproduces the experimental value to within 1 kcal/mol. By contrast, using parameter set P1, the error is -12.9 kcal/mol. (Graph Presented).

© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim. A highly efficient water-tolerant, solid-base catalyst for the self-condensation of biomass-derived methyl ketones to jet-diesel fuel precursors was developed by grafting site-isolated secondary amines on silica-alumina supports. It is shown that apart from the nature and density of amine groups and the spatial separation of the acidic and basic sites, the acidity of the support material plays a critical role in defining the catalytic activity. It is also found that a combination of weakly acidic silanol/aluminol with secondary amine groups can mimic proline catalysts and are more effective in catalyzing the selective dimerization reaction than the combination of amines with organic acids. In situ FTIR measurements demonstrate that acidic groups activate methyl ketones through their carbonyl groups leading to a favorable C-C bond formation step involving an enamine intermediate. DFT analysis of the reaction pathway confirms that C-C bond formation is the rate-limiting step.

Quantum mechanics/molecular mechanics (QM/MM) models are applied to investigate the adsorption and cracking of n-hexane on ZSM-5 and Faujasite zeolite structures. These simulations account for the long-range electrostatic and midrange van-der-Waals interactions in the zeolite and provide energy barriers that are close to experimental data. The active acidic site was modeled by dispersion corrected density functional theory (DFT, ω B97X-D6-311/G∗). The long-range interactions were calculated by molecular mechanics (MM). The adsorbed molecules under investigation are characterized by their thermodynamic properties (adsorption energy and enthalpy). The influence of the zeolite type on the thermodynamic properties is also pointed out. The results reveal that the kinetics of cracking is insensitive to differences in acid strengths. The thermodynamic data obtained are mainly influenced by the adsorption energy of n-hexane on ZSM-5 and/or Faujasite (Y) structures. The pore sizes of the zeolite types can lead to a stronger or weaker adsorption energy. Except for the thermodynamic property investigations in this article, the quasi-classical trajectory method (QCT) is used for investigating the pathways along metastable intermediates toward various cracking products. Not only the reaction barriers but also the reaction dynamics determine the reaction selectivity.

Aim

This study aimed to describe the change in surgical practice and the impact of SARS-CoV-2 on mortality after surgical resection of colorectal cancer during the initial phases of the SARS-CoV-2 pandemic.

Method

This was an international cohort study of patients undergoing elective resection of colon or rectal cancer without preoperative suspicion of SARS-CoV-2. Centres entered data from their first recorded case of COVID-19 until 19 April 2020. The primary outcome was 30-day mortality. Secondary outcomes included anastomotic leak, postoperative SARS-CoV-2 and a comparison with prepandemic European Society of Coloproctology cohort data.

Results

From 2073 patients in 40 countries, 1.3% (27/2073) had a defunctioning stoma and 3.0% (63/2073) had an end stoma instead of an anastomosis only. Thirty-day mortality was 1.8% (38/2073), the incidence of postoperative SARS-CoV-2 was 3.8% (78/2073) and the anastomotic leak rate was 4.9% (86/1738). Mortality was lowest in patients without a leak or SARS-CoV-2 (14/1601, 0.9%) and highest in patients with both a leak and SARS-CoV-2 (5/13, 38.5%). Mortality was independently associated with anastomotic leak (adjusted odds ratio 6.01, 95% confidence interval 2.58-14.06), postoperative SARS-CoV-2 (16.90, 7.86-36.38), male sex (2.46, 1.01-5.93), age >70 years (2.87, 1.32-6.20) and advanced cancer stage (3.43, 1.16-10.21). Compared with prepandemic data, there were fewer anastomotic leaks (4.9% versus 7.7%) and an overall shorter length of stay (6 versus 7 days) but higher mortality (1.7% versus 1.1%).

Conclusion

Surgeons need to further mitigate against both SARS-CoV-2 and anastomotic leak when offering surgery during current and future COVID-19 waves based on patient, operative and organizational risks.