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Unable to successfully perform Permanova analysis using the latest version 2.6-8 #693

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jieyin2023 opened this issue Sep 29, 2024 · 0 comments

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@jieyin2023
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Dear author,
I don't know why the output of the same code after updating Vegan is different. The new version of Vegan cannot output the impact of each treatments on community structure. only
here is my code: permanova_results <- adonis2(formula = bray.dist ~ Experiment+ Soil +Genotype+Sample_type, data = merged_pc)
The results of the old version is shown in the left figure, and the output of the new version is shown in the right figure. It is very important to me, please tell me why.
Uploading old version.png…
Uploading new verson.png…

@vegandevs vegandevs locked and limited conversation to collaborators Sep 29, 2024
@jarioksa jarioksa converted this issue into discussion #694 Sep 29, 2024

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