Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
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Updated
Jun 20, 2019 - Java
Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
Detect the presence of specific resistance genes in a sample using the IRIDA system
Collect basic sequence QC metrics from nanopore reads
Collect info about IRIDA uploads for display in monitoring site
Automated upload of sequence data to IRIDA platform
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site
A web UI for the fungal version of antiSMASH.
Any crazy idea of microbiology will be included in it.
Automated uploading of sequence data into IRIDA instances, used in conjunction with auto-irida-azure-upload
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system
Taller introductorio orientado a la visualización, análisis estadístico y ecológico en R, dirigido al manejo de datos en investigación, e impartido para la PUC durante 2021.
A GLUE project for comparative genomic analysis of circular Rep-encoding single-stranded DNA (CRESS DNA) viruses
Simulate a microbial pathogen outbreak dataset for use in variant-calling validations
Nextflow Wrapper for Mykrobe
R Shiny App to show basic features of microbial genomes
Perform read mapping and variant calling using snippy
Data from ecological studies about how the climate change drives the microbial community dinamycs in aquatic ecosystems
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