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PhD student working in the field of plant genomics and bioinformatics
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Institute of Plant Breeding, Justus Liebig University, @agolicz Lab
- Giessen, Germany
- www.linkedin.com/in/joseantoniomonterotena
Popular repositories Loading
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Haplotype-based-Pangenome-Wheat-Analysis
Haplotype-based-Pangenome-Wheat-Analysis PublicThis repository contains the files from my master thesis project required to conduct a whole-genome analysis of haploblocks in wheat based on pairwise comparisons between assemblies. This is based …
R 3
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Alignment-density-matters-when-assigning-bins-into-haploblocks
Alignment-density-matters-when-assigning-bins-into-haploblocks PublicFeedback and suggestions for improvement of the method to assign haploblocks from mummer alignments described in the paper 'A haplotype-led approach to increase the precision of wheat breeding'
HTML
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shapeit_reformat
shapeit_reformat PublicThe bash script reformats SHAPEIT .haps file to show samples by rows instead of variants by rows
Shell
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PED-file-subset
PED-file-subset PublicExtract families within PED files by providing the name of the file and the individual ID for which the rows corresponding to its ancestors will be extracted
Shell
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