Quickly search, compare, and analyze genomic and metagenomic data sets.
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Updated
Aug 12, 2024 - Python
Quickly search, compare, and analyze genomic and metagenomic data sets.
a go program for getting the terminal edges with the specific types.
Fast and space-efficient taxonomic classification of long reads
A versatile toolkit for k-mers with taxonomic information
This repository have the implementation of a string reconstructor using Bruijn graphs and eulerian path. This problem is very important in bioinformatics, because it is used to reconstruct the DNA sequence from a set of k-mers.
Efficient search of complex motifs in kmer space
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Count kmers with a more efficient (faster) hash table
modular k-mer count matrix and Bloom filter construction for large read collections
βHΞDI (Biomarker-based Heuristic Engine for Dengue Identification) is a computational tool designed for the identification of Dengue virus serotypes in wastewater next-generation sequencing data.
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
SuperSampler, an efficient scaled size sketching and sketch comparison tool
Bioinformatics 101 tool for counting unique k-length substrings in DNA
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
instructions, python and R code for generating lava lamp plots of kmer coverage
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